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Bagley_CV_new_Oct28_ADEM.tex
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Bagley_CV_new_Oct28_ADEM.tex
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\documentclass[margin,line]{res}
\usepackage{hyperref}
\usepackage{pifont}
\usepackage[latin1]{inputenc}
\usepackage{longtable}
%\topmargin .5in
%\oddsidemargin -.5in
%\evensidemargin -.5in
%\textwidth=6.0in
\textheight=9.0in
%\itemsep=0in
%\parsep=0in
\usepackage{fancyhdr}
\topmargin=-.25in
%\textheight=8.5in
\pagestyle{fancy}
\renewcommand{\headrulewidth}{0pt}
\fancyhf{}
\usepackage{graphicx}
\usepackage{changepage}
\usepackage{enumitem}
%\cfoot{\thepage}
%\lfoot{\textit{\footnotesize Research Statement}}
%\rfoot{{\footnotesize Curriculum Vitae, Justin C. Bagley, \thepage}}
\rfoot{{\footnotesize Justin C. Bagley \textendash~CV \thepage}}
%%%% NAME
\begin{document}
\name{Justin C. Bagley \vspace*{.1in}}
\begin{resume}
%%%% CONTACT INFORMATION
\section{\sc Contact Information}
\vspace{.05in}
\begin{tabular}{@{}p{2.5in}p{2.25in}}
Field Operations Division & Phone: (334) 271-7783 \\
\href{https://adem.alabama.gov}{Alabama Department of Environmental} & Dept. Office: ~(334) 260-2700 \\ \href{https://adem.alabama.gov}{Management (ADEM)} & E-mail: \href{mailto:justin.bagley@adem.alabama.gov}{\tt justin.bagley@adem.alabama.gov} \\
1350 Coliseum Blvd & Websites: \href{https://justinbagley.org/}{\tt website} ; \href{https://justinbagley.rbind.io/}{\tt blog} \\
Montgomery, AL 36110-2412, USA &
%\href{http://umsl.edu/\%7Ebiology/index.html}{University of Missouri\textendash St. Louis} & (314)-516-5125 (office)\\
%\href{mailto:bagleyj@umsl.edu}{bagleyj@umsl.edu} & \href{https://justinbagley.org}{https://justinbagley.org}\\
\end{tabular}
%%%% ACADEMIC POSITIONS (FILL IN WITH PROFESSORSHIPS)
%% example text/formatting:
%\section{\sc Academic Positions}
%{\bf \href{http://www.ucsd.edu/}{University of California, San Diego}}\\
%\vspace*{-.1in}
%\begin{itemize}
%\item[] \hspace*{-2mm} \textit{Assistant Teaching Professor}, %\href{http://www.cs.ucsd.edu/}{Computer Science \& Engineering} (2019 -- present)
%\begin{itemize}
%\item Affiliation: \href{http://bioinformatics.ucsd.edu/}{Bioinformatics and Systems Biology Graduate Program}
%\item Affiliation: \href{http://dbmi.ucsd.edu/}{Department of Biomedical Informatics (School of Medicine)}
%\item Affiliation: \href{https://datascience.ucsd.edu/research/life-cluster/}{Hal{\i}c{\i}o{\u g}lu Data Science Institute}
%\end{itemize}
%\end{itemize}
%%%% PROFESSIONAL APPOINTMENTS (POST-PHD ACADEMIC EMPLOYMENT)
\section{\sc Professional Appointments}
{\bf \href{https://adem.alabama.gov}{Alabama Department of Environmental Management}}, Montgomery, AL, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Environmental Scientist}, Environmental Indicators Section, Field Operations Division (2023 -- \emph{present})
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.aum.edu/}{Auburn University at Montgomery}}, Montgomery, AL, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Adjunct Professor}, Department of Biology and Environmental Science (2022 -- \emph{present})
\end{itemize}
\vspace*{-.1in}
{\bf \href{http://www.jsu.edu/}{Jacksonville State University}}, Jacksonville, AL, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Assistant Professor}, Department of Biology (2020 -- 2022)
\end{itemize}
\vspace*{-.1in}
{\bf \href{http://www.umsl.edu/}{University of Missouri\textendash St. Louis}}, St. Louis, MO, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Postdoctoral Research Associate}, Department of Biology (2018 -- 2020)
\begin{itemize}
\item Advisor: Nathan Muchhala (Funding: \href{https://www.nsf.gov/awardsearch/showAward?AWD_ID=1754802&HistoricalAwards=false}{NSF DEB})
\end{itemize}
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.vcu.edu/}{Virginia Commonwealth University}}, Richmond, VA, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Affiliate Researcher}, Department of Biology (2018 -- \emph{present})
\item[] \hspace*{-2mm} \textit{Postdoctoral Scholar}, Department of Biology (2017 -- 2018)
\begin{itemize}
\item Advisor: Andrew J. Eckert (Funding: \href{https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503425}{NSF Macrosystems Biology})
\end{itemize}
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.unb.br/}{Universidade de Bras\'{i}lia}}, Bras\'{i}lia, Distrito Federal, Brazil
%\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Senior Research Associate}, Departamento de Zoologia (2015 -- 2018)
\end{itemize}
%\vspace*{-.1in}
{\bf \href{https://www2.unesp.br/}{Universidade Estadual Paulista (UNESP)}}, S\~{a}o Jose do Rio Preto, S\~{a}o Paulo, Brazil
%\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Young Talent Fellow Postdoc}, Departamento de Zoologia e Bot\^{a}nica (2015 -- 2017)
\begin{itemize}
% \item Director: Francisco Langeani; Coordinator: Guarino R. Colli (Funding: Science Without Borders program, Conselho Nacional de Desenvolvimento Cient\'{i}fico e Tecnol\'{o}gico (CNPq))
% \item Director: Francisco Langeani; Coordinator: Guarino R. Colli (Funding: Science Without Borders, CNPq, Brazil)
\item Director: Kiko Langeani; Coordinator: Guarino R. Colli (Funding: \href{http://www.cnpq.br/}{CNPq})
\end{itemize}
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.uvu.edu}{Utah Valley University}}, Orem, UT, USA
%\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm} \textit{Adjunct Instructor of Ecology}, Department of Biology (Summer 2014)
\end{itemize}
%%%% EDUCATION
\section{\sc Education}
{\bf \href{https://www.byu.edu/}{Brigham Young University}}, Provo, UT, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm}\href{https://biology.byu.edu/}{Ph.D. in Integrative Biology} (December 2014) %GPA: 3.58
\begin{itemize}
\item Advisor: \href{https://lifesciences.byu.edu/directory/jerald-johnson/}{Jerald B. Johnson}
\end{itemize}
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.ua.edu/}{The University of Alabama}}, Tuscaloosa, AL, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm}\href{https://bsc.ua.edu}{M.Sc. in Biology} (August 2008) %GPA: 3.39
\begin{itemize}
\item Advisor: \href{https://bsc.ua.edu/profiles/phillip-m-harris/}{Phillip M. Harris}
\end{itemize}
\item[] \hspace*{-2mm}\href{https://bsc.ua.edu}{B.Sc. in Biology} (December 2004) %GPA: 3.43
\begin{itemize}
\item Advisor: \href{https://bsc.ua.edu/profiles/stephen-m-secor/}{Stephen M. Secor}
\end{itemize}
\end{itemize}
\vspace*{-.1in}
{\bf \href{https://www.sheltonstate.edu/}{Shelton State Community College}}, Tuscaloosa, AL, USA\\
\vspace*{-.1in}
\begin{itemize}
\item[] \hspace*{-2mm}A.S. in General Studies (May 2002) %GPA: 4.00
\end{itemize}
%%%% LANGUAGES
\section{\sc Languages}
\emph{Spoken:} English (native), Spanish (14 yrs), Portuguese (functional, 2.5 yrs) \\
\emph{Programming \& Markup:} \textsf{bash}/shell, \href{https://cran.r-project.org}{\textsf{R}}, \href{https://www.python.org}{Python}, \href{https://git-scm.com}{\textsf{git}}, Swift, \href{https://www.markdownguide.org}{Markdown}, \href{https://www.latex-project.org}{\LaTeX}
%%%% RESEARCH INTERESTS
\section{\sc Research Interests}
freshwater fishes, environmental science, community ecology and biogeography, \\
biological assessment of water quality (e.g., biomonitoring, index of biotic integrity), integrative taxonomy, phylogeography, phylogenomics, population genomics, \\
ecological niche modeling, speciation, gene flow (hybridization), species delimitation
%,\\
%community ecology, biological assessment of water quality (e.g. biomonitoring, fisheries), freshwater fishes
%\vspace*{-.1in}
%\begin{itemize}
% \item[] \hspace*{-2mm}<otherItem>
%\end{itemize}
%%%% PUBLICATIONS
\section{\sc Publications}
%%%%%%%%%%%%%%%%%%%% Figure/Image No: 1 starts here %%%%%%%%%%%%%%%%%%%%
\begin{figure}[h]
\includegraphics[scale=1.1]{./metrics_Oct2022.pdf}
% \centering
\end{figure}
%%%%%%%%%%%%%%%%%%%% Figure/Image No: 1 Ends here %%%%%%%%%%%%%%%%%%%%
%\vspace{-2mm} %
\emph{Abbreviations:} \textsuperscript{E}equal contribution, \textsuperscript{U}undergraduate student, \textsuperscript{G}graduate student \vspace{3mm} \\ %
\textbf{A. Peer-reviewed Journal Papers and Book Chapters}\vspace{2mm}\\*
%25. \textbf{Bagley JC}, Moon S\textsuperscript{U}, Grasso ZG\textsuperscript{U} (\textit{in review}). Phylogeography and diversification in lower Central America: an updated synthesis. In: Neotropical Diversification. (eds Rull V, Carnaval A). \textit{\textbf{Springer}}. \\
%~\\
%24. \textbf{Bagley JC}, Aquino PPU, Hrbek T, Hernandez S\textsuperscript{G}, Langeani F, Colli GR (\emph{in}\\
%\hspace*{8mm} \emph{revision}) Using ddRAD-seq phylogeography to test for genetic effects of \\
%\hspace*{8mm} headwater river capture in suckermouth armored catfish (Loricariidae:\\ \vspace{2mm}
%\hspace*{8mm}\emph{Hypostomus}) from the central Brazilian Shield. {\it \textbf{Molecular Ecology}}.\\%*\vspace{2mm}
%~\\
%
%Soares, Y.F.F., Aquino, P.P.U., Bagley, J.C., Langeani, F., Colli, G.R., in review. Two new species of Hypostomus suckermouth armored catfishes (Teleostei: Loricariidae) from Central Brazil. Journal of Fish Biology.
%
25. \textbf{Bagley JC}, Johnson CC, McGregor SW, Breitman MF, Armbruster JW, \\
\hspace*{8mm} Harris PM, O'Neil PE (2023). Marine and freshwater fishes of Alabama: a \\
\hspace*{8mm} revised checklist and discussion of taxonomic issues. \textit{\textbf{Zootaxa}}, 5357(3), 301--341.\\
\hspace*{8mm} \href{https://doi.org/10.11646/zootaxa.5357.3.1}{\tt doi.org/10.11646/zootaxa.5357.3.1}\\
%~\\
24. \textbf{Bagley JC}, Breitman MF, Johnson JB (2022). Length\textendash weight relation for \\
\hspace*{8mm} seven Neotropical freshwater fish species (Actinopterygii) endemic to Central \\
\hspace*{8mm} America. \textit{\textbf{Acta Ichthyologica et}}
\textit{\textbf{Piscatoria}}, 2022, 183--187.\\
\hspace*{8mm} \href{https://doi.org/10.3897/aiep.52.86467}{\tt doi:10.3897/aiep.52.86467}\\
%~\\
23. Calder\'{o}n-Acevedo CA\textsuperscript{GE}, \textbf{Bagley JC}\textsuperscript{E}, Muchhala N (2022). Genome-wide \\
\hspace*{8mm} ultraconserved elements resolve phylogenetic relationships and biogeographic \\
\hspace*{8mm} history among Neotropical leaf-nosed bats in the genus \emph{Anoura} (Phyllostomidae).\\
\hspace*{8mm} \textit{\textbf{Molecular Phylogenetics and Evolution}}, 167, 107356. Available \\
\vspace{2mm}
\hspace*{8mm}online 10 November 2021. \href{https://doi.org/10.1016/j.ympev.2021.107356}{\tt doi:10.1016/j.ympev.2021.107356}\\
%~\\
22. Soares YFF, Aquino PPU, \textbf{Bagley JC}, Langeani F, Colli GR (2021) Two\\
\hspace*{8mm} new species of \emph{Hypostomus} suckermouth armored catfishes (Teleostei:\\
\hspace*{8mm} Loricariidae) from Central Brazil. {\it \textbf{Journal of Fish Biology}}. Available online. \\
\vspace{2mm}
\hspace*{8mm}\href{doi:10.1111/jfb.14777}{\tt doi:10.1111/jfb.14777.} \\
%~\\
21. Menon M, \textbf{Bagley JC}, Page G, Whipple AV, Schoettle AW, Still C, Wehenkel\\
\hspace*{8mm} C, Waring K, Flores-Renter\'{i}a L, Cushman SA, Eckert AJ (2021) Adaptive\\
\hspace*{8mm} evolution in a conifer hybrid zone is driven by a mosaic of introgressed and\\ \vspace{2mm}
\hspace*{8mm}standing genetic variants. {\it \textbf{Communications Biology}}, 4(1), 1\textendash 14. \\
%~\\
20. \textbf{Bagley JC}, Heming NM, Guti\'{e}rrez EE, Devisetty UK, Mock KE, Eckert AJ,\\
\hspace*{8mm} Strauss SH (2020) Genotyping-by-sequencing and ecological niche \\
\hspace*{8mm} modeling illuminate phylogeography, admixture, and Pleistocene range dynamics\\ \vspace{2mm}
\hspace*{8mm}in quaking aspen (\textit{Populus tremuloides}). {\it \textbf{Ecology and Evolution}}, 10, 4609\textendash 4629.\\
%~\\
19. \textbf{Bagley JC}, Uribe-Convers S, Carlsen M, Muchhala N (2020) Utility of\\
\hspace*{8mm} targeted sequence capture for phylogenomics in rapid, recent angiosperm radia-\\
\hspace*{8mm} tions: Neotropical \emph{Burmeistera} bellflowers as a case study. \textit{\textbf{Molecular Phylo-}\\
\hspace*{8mm}\textbf{ genetics and Evolution}}, 152, 106769. Available online.
\href{https://www.doi.org/10.1016/j.ympev.2020.106769}{\tt doi:10.1016/j.ympev.}\\
\vspace{2mm}
\hspace*{7mm} \href{doi:10.1016/j.ympev.2020.106769}{\tt2020.106769}.\\
%~\\
18. \textbf{Bagley JC}, Aquino PPU, Breitman MF, Langeani F, Colli GR (2019) DNA\\
\hspace*{8mm} barcode and minibarcode identification of freshwater fishes from Cerrado head-\\ \vspace{2mm}
\hspace*{8mm}water streams in central Brazil. \textit{\textbf{Journal of Fish Biology}}, 95, 1046\textendash 1060. \\
%~\\
17. Menon M\textsuperscript{G}, Landguth E, S\'{a}enz AL\textsuperscript{G}, \textbf{Bagley JC}, Schoettle A, Wehenkel CA,\\
\hspace*{8mm} Cushman S, Waring K, Eckert AJ (2019) Tracing the footprints of a moving \\
\hspace*{8mm} hybrid zone under a demographic history of speciation with gene flow. \textit{\textbf{Evolu-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{tionary Applications}}, 13(1), 195\textendash 209. \\
%Accepted Author Manuscript \href{doi:10.1111/eva.12795}{\tt doi:10.1111/eva.12795}.\\
%~\\
16. \textbf{Bagley JC}, Hickerson MJ, Johnson JB (2018) Testing hypotheses of diversifica-\\
\hspace*{8mm} tion in Panamanian frogs and freshwater fishes using hierarchical approximate\\ \vspace{2mm}
\hspace*{8mm}Bayesian computation with model averaging. {\it \textbf{Diversity}}, 10, 120. \\
%~\\
15. Breitman MF, Domingos FMCB, \textbf{Bagley JC}, Wiederhecker HC, Ferrari TB\textsuperscript{U},\\
\hspace*{8mm} Cavalcante VHGL\textsuperscript{G}, et al.\textsuperscript{UG} (2018) A new species of \emph{Enyalius} (Squamata:\\ \vspace{2mm}
\hspace*{8mm}Leiosauridae) endemic to the Brazilian Cerrado. {\it \textbf{Herpetologica}}, 74(4), 355\textendash 369. \\
%~\\
14. \textbf{Bagley JC}, Harris PM, Mayden, RL (2018) Phylogeny and divergence times of\\
\hspace*{8mm} suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence\\
\hspace*{8mm} analyses of molecules, morphology, and fossils. {\it \textbf{PeerJ}}, 6, e5168. Available\\
\vspace{2mm}
\hspace*{8mm}online. \href{https://doi.org/10.7717/peerj.5168}{\tt doi:10.7717/peerj.5168.} \\
%~\\
13. Menon MG\textsuperscript{G}, \textbf{Bagley JC}, Friedline C, Whipple A, Schoettle A, S\'{a}enz AL\textsuperscript{G},\\
\hspace*{8mm} Wehenkel CA, Flores-Renter\'{i}a LH, Sniezko R, Cushman S, Waring K, Eckert\\
\hspace*{8mm} AJ (2018) The role of hybridization during ecological divergence between south-\\
\hspace*{8mm} western white pine, {\it Pinus strobiformis}, and limber pine, {\it P. flexilis}. {\it \textbf{Molecular}\\ \vspace{2mm}
\hspace*{8mm}\textbf{Ecology}}, 27, 1245\textendash 1260. \\ %{doi: 10.1111/mec.14505}. \\
%~\\
12. Overcast I\textsuperscript{G}, \textbf{Bagley JC}, Hickerson, MJ (2017) Strategies for improving approx-\\
\hspace*{8mm} imate Bayesian computation tests for synchronous diversification. {\it \textbf{BMC Evo-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{lutionary Biology}}, 17, 203. \\
%~\\
11. Cer\'{i}aco LM, Guti\'{e}rrez EE, Dubois A, et al.\textsuperscript{UG} (Appendix 1 of \textbf{Supporting Sig-}\\
\hspace*{8mm} \textbf{natories}) (2016) Photography-based taxonomy is inadequate, unnecessary, and\\ \vspace{2mm}
\hspace*{8mm}potentially harmful for biological sciences. {\it \textbf{Zootaxa}}, 4196, 435\textendash 445. \\
%~\\
10. \textbf{Bagley JC}, Matamoros WA, McMahan CD, Tobler M, Chakrabarty P, John-\\
\hspace*{8mm} son JB (2016) Phylogeography and species delimitation in convict cichlids (Ci-\\
\hspace*{8mm} chlidae: \emph{Amatitlania}): implications for taxonomy and Plio\textemdash Pleistocene evolu-\\
\hspace*{8mm} tionary history in Central America. {\it \textbf{Biological Journal of the Linnean So-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{ciety}}, 120(1), 155\textendash 170. \\
%~\\
9. \textbf{Bagley JC}, Alda F, Breitman MF, van den Berghe E, Bermingham E, Johnson\\
\hspace*{8mm} JB (2015) Assessing species boundaries using multilocus species delimitation in \\
\hspace*{8mm} a morphologically conserved group of Neotropical freshwater fishes, the \emph{Poecilia}\\ \vspace{2mm}
\hspace*{8mm} \emph{sphenops} species complex (Poeciliidae). {\it \textbf{PLoS One}}, 10(4), e0121139. \\
%~\\
8. Watson CM, Makowsky R, \textbf{Bagley JC}\textsuperscript{G} (2014) Reproductive mode evolution in\\
\hspace*{8mm} lizards revisited: updated analyses examining geographic, climatic and phyloge-\\
\hspace*{8mm} netic effects support the cold-climate hypothesis. {\it \textbf{Journal of Evolutionary}\\ \vspace{2mm}
\hspace*{8mm}\textbf{Biology}}, 27(12), 2767\textendash 2780. \\
%~\\
7. \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2014b) Testing for shared biogeographic history in the\\
\hspace*{8mm} lower Central American freshwater fish assemblage using comparative phylo-\\
\hspace*{8mm} geography: concerted, independent, or multiple evolutionary responses? {\it \textbf{Ecol-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{ogy and Evolution}}, 4, 1686\textendash 1705. \\
%~\\
6. \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2014a) Phylogeography of the lower Central American\\
\hspace*{8mm} Neotropics: diversification between two continents and between two seas. {\it \textbf{Bio-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{logical Reviews}}, 89(4), 767\textendash 790. \\
%~\\
5. \textbf{Bagley JC}\textsuperscript{G}, Sandel M, Travis J, Lozano-Vilano M de L, Johnson JB (2013)\\
\hspace*{8mm} Paleoclimatic modeling and phylogeography of least killifish, \emph{Heterandria for-}\\
\hspace*{8mm} \emph{mosa}: insights into Pleistocene expansion-contraction dynamics and evolution-\\
\hspace*{8mm} ary history of North American Coastal Plain freshwater biota. {\it \textbf{BMC Evolut-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{ionary Biology}}, 13, 223. \\
%~\\
4. Unmack PJ, \textbf{Bagley JC}\textsuperscript{G}, Adams MD, Hammer MD, Johnson JB (2012) Molec-\\
\hspace*{8mm} ular phylogeny and phylogeography of the Australian freshwater fish genus \emph{Galax-}\\
\hspace*{8mm} \emph{iella} (Teleostei: Galaxiidae), with an emphasis on dwarf galaxias (\emph{G. pusilla}).\\ \vspace{2mm}
\hspace*{8mm}{\it \textbf{PLoS One}}, 7(6), e38433. \\
%~\\
3. \textbf{Bagley JC}\textsuperscript{G}, Mayden RL, Roe KJ, Holznagel W, Harris PM (2011). Congeneric\\
\hspace*{8mm} phylogeography reveals polyphyly and novel biodiversity within black basses\\
\hspace*{8mm} (Centrarchidae: \emph{Micropterus}). {\it \textbf{Biological Journal of the Linnean Society}},\\ \vspace{2mm}
\hspace*{8mm}104, 346\textendash 363. \\
%~\\
2. Johnson JB, \textbf{Bagley JC}\textsuperscript{G} (2011) Ecological drivers of life-history evolution. In:\\
\hspace*{8mm} Ecology and Evolution of Poeciliid Fishes. (eds Evans JP, Pilastro A, Schlupp\\ \vspace{2mm}
\hspace*{8mm} I), pp. 38\textendash 49. {\it \textbf{University of Chicago Press}}, Chicago, IL. ISBN-10: 0226222748. \\
%~\\
1. Thompson M\textsuperscript{G}, \textbf{Bagley JC}\textsuperscript{G}, Rasco J, Lackey K, Cox M\textsuperscript{G} (2007) The Respiratory\\
\hspace*{8mm} System. In: Biology: The Study of Life (eds Rasco J, Lackey K). {\it \textbf{Kendall/Hunt}\\
\hspace*{8mm}\textbf{Publishing}}. ISBN-10: 0757556434.
%\vspace*{-.2in}
%\subsection*{\textbf{B. Preprints}}
\textbf{B. Preprints}%\vspace{2mm}\\*
4. \textbf{Bagley JC}, Aquino PPU, Hrbek T, Hernandez S\textsuperscript{G}, Langeani F, Colli GR (2021)\\
\hspace*{8mm} Using ddRAD-seq phylogeography to test for genetic effects of headwater \\
\hspace*{8mm} river capture in suckermouth armored catfish (Loricariidae: \emph{Hypostomus})\\
\hspace*{8mm} from the central Brazilian Shield. {\it \textbf{bioRxiv}}. Available online at: \\ \vspace{2mm}
\hspace*{8mm}\href{https://doi.org/10.1101/2021.04.18.440224}{\tt doi:10.1101/2021.04.18.440224}. \\%*\vspace{2mm}
%~\\
3. \textbf{Bagley JC}, Heming NM, Guti\'{e}rrez EE, Devisetty UK, Mock KE, Eckert AJ,\\
\hspace*{8mm} Strauss SH (2018) Genotyping-by-sequencing and ecological niche modeling il-\\
\hspace*{8mm} luminate phylogeography, admixture, and Pleistocene range dynamics in quaking\\
\hspace*{8mm} aspen (\textit{Populus tremuloides}). {\it \textbf{PeerJ Preprints}}. Available online at: \\ \vspace{2mm}
\hspace*{8mm}\href{https://peerj.com/preprints/27162/}{\tt https://peerj.com/preprints/27162/}. \\
%~\\
2. \textbf{Bagley JC}, Hickerson MJ, Johnson JB (2018) Testing hypotheses of diversi-\\
\hspace*{8mm} fication in Panamanian frogs and freshwater fishes using hierarchical approximate\\
\hspace*{8mm} Bayesian computation with model averaging. {\it \textbf{PeerJ Preprints}}. Available on-\\ \vspace{2mm}
\hspace*{8mm}line at: \href{https://peerj.com/preprints/26623/}{\tt https://peerj.com/preprints/26623/}. \\
%~\\
1. Menon MG\textsuperscript{G}, \textbf{Bagley JC}, Friedline C, Whipple A, Schoettle A, S\'{a}enz AL\textsuperscript{G}, We-\\
\hspace*{8mm} henkel CA, Flores-Renter\'{i}a LH, Sniezko R, Cushman S, Waring K, Eckert AJ\\
\hspace*{8mm} (2017) The role of hybridization during ecological divergence between south-\\
\hspace*{8mm} western white pine, \emph{Pinus strobiformis}, and limber pine, \emph{P. flexilis}. {\it \textbf{bioRxiv}}.\\
\hspace*{8mm} Link: \href{https://www.biorxiv.org/content/early/2017/09/07/185728}{\tt https://www.biorxiv.org/content/early/2017/09/07/185728}.
%\subsection*{\textbf{C. Manuscripts In Preparation}}
\textbf{C. Manuscripts In Preparation}%\vspace{2mm}\\*
3. \textbf{Bagley JC}, Bonner R\textsuperscript{U}, Breitman MF, Dease L\textsuperscript{U}, Glick M\textsuperscript{U}, Peters J\textsuperscript{U}, Sciuchetti \\
\hspace*{8mm} M (\emph{in prep.}) Ecological niche modeling and future distributions of coastal dune \\ \vspace{2mm}
\hspace*{8mm}plants endemic to the northern Gulf of Mexico. {\it \textbf{Global Change Biology}}. \\
%~\\
2. \textbf{Bagley JC}, Breitman MF, Bolte C\textsuperscript{G}, Johnson JB (\emph{in prep.}) Idiosyncratic effects\\
\hspace*{8mm} of tectonism, sea levels, and continental shelf width on Neotropical freshwater\\ \vspace{2mm}
\hspace*{8mm}fish diversification in Central America. {\it \textbf{BMC Evolutionary Biology}}. \\
%~\\
1. \textbf{Bagley JC}, Aquino PPU, Langeani F, Colli GR (\emph{in prep.}) RAD-seq phylogeog-\\
\hspace*{8mm} raphy of darter characins, \emph{Characidium}: insight into fine-scale biogeography\\
\vspace{2mm}
\hspace*{8mm}of the central Brazilian Highlands. {\it \textbf{Ecology and Evolution}}.
%\\
%
%2. \textbf{Bagley JC}, Aquino PPU, Langeani F, Colli GR (\emph{in prep.}) RAD-seq phylogeography of the tetra, \emph{Hasemania hanseni}: insight into fine-scale biogeography of the central Brazilian Highlands. {\it \textbf{Ecology and Evolution}}. \\
%~\\
%2. \textbf{Bagley JC}, Pyron M, Jacquemin SJ (\emph{in prep.}) A phylogenetic comparative analysis of sperm competition, mating system, and sexual size dimorphism in North American sunfishes and black basses. {\it \textbf{Behavioral Ecology and Sociobiology}}. \\
%~\\
%1. Domingos FMCB, \textbf{Bagley JC}, Lemmon A, Colli GR, Beheregaray LB (\emph{in prep.})\\
%\hspace*{8mm} Inner conflict: a comparative phylogeographical test of effects of ecology and\\
%\hspace*{8mm} history on the evolution of a Neotropical biodiversity hotspot. {\it %\textbf{Systematic}\\
%\hspace*{8mm} \textbf{Biology}}.
%\subsection*{\textbf{D. Datasets, Open-Source Software \& Code}}
\textbf{D. Datasets, Open-Source Software \& Code}%\vspace{2mm}\\*
9. \textbf{Bagley JC} (2020) MAGNET. justincbagley/MAGNET: MAGNET version 1.2.0.\\ \vspace{2mm}
\hspace*{8mm}\textbf{Zenodo}. Available at: \href{http://doi.org/10.5281/zenodo.4387279}{\tt http://doi.org/10.5281/zenodo.4387279}. \\
%~\\
8. \textbf{Bagley J}, Heming N, Guti\'{e}rrez E (2020) Data for: Genotyping-by-sequencing and \\
\hspace*{8mm} ecological niche modeling illuminate phylogeography, admixture, and Pleistocene\\ %\vspace{2mm}
\hspace*{8mm} range dynamics in quaking aspen (\textit{Populus tremuloides}). {\it \textbf{Mendeley Data}}, v2.\\ \vspace{2mm}
\hspace*{8mm}Available at: \href{http://dx.doi.org/10.17632/jhkhvdgyfy.2}{\tt http://dx.doi.org/10.17632/jhkhvdgyfy.2}. \\
%~\\
7. \textbf{Bagley JC} (2020) PIrANHA. justincbagley/PIrANHA: PIrANHA version 0.4a4.\\
\vspace{2mm}
\hspace*{8mm} \textbf{Zenodo}. Available at: \href{http://doi.org/10.5281/zenodo.4331675}{\tt http://doi.org/10.5281/zenodo.4331675}. \\
%~\\
%7. \textbf{Bagley JC} (2019) PIrANHA. justincbagley/PIrANHA: PIrANHA version 0.3a2\\
%\hspace*{8mm} [Data Set]. \textbf{Zenodo}. Available at:\\ \vspace{2mm}
%\hspace*{8mm}\href{https://zenodo.org/badge/latestdoi/64274217}{\tt %https://zenodo.org/badge/latestdoi/64274217}. \\
%~\\
6. \textbf{Bagley J} (2019) Data for: DNA barcode and minibarcode identification of fresh-\\
\hspace*{8mm} water fishes from Cerrado headwater streams in central Brazil. [Data Set].\\ \vspace{2mm}
\hspace*{8mm}{\it \textbf{Mendeley Data}}, v1. Available at: \href{http://dx.doi.org/10.17632/9pr3cpf33g.1}{\tt http://dx.doi.org/10.17632/9pr3cpf33g.1}. \\
%~\\
5. \textbf{Bagley JC}, Hickerson MJ (2018) Data for: Testing hypotheses of diversification\\
\hspace*{8mm} in Panamanian frogs and freshwater fishes using hierarchical approximate Bayesian\\
\hspace*{8mm} computation with model averaging. [Data Set]. {\it \textbf{Mendeley Data}}, v2. Available\\ \vspace{2mm}
\hspace*{8mm}at: \href{http://dx.doi.org/10.17632/f94kxmwf2n.2}{\tt http://dx.doi.org/10.17632/f94kxmwf2n.2}. \\
%~\\
4. \textbf{Bagley JC}, Mayden R, Harris P (2018) Data for: Phylogeny and divergence times\\
\hspace*{8mm} of suckers (Cypriniformes: Catostomidae) inferred from Bayesian total-evidence\\
\hspace*{8mm} analyses of molecules, morphology, and fossils. [Data Set]. {\it \textbf{Mendeley Data}}, v2.\\ \vspace{2mm}
\hspace*{8mm}Available at: \href{http://dx.doi.org/10.17632/trw6sb4v7w.2}{\tt http://dx.doi.org/10.17632/trw6sb4v7w.2}. \\
%~\\
%4. \textbf{Bagley JC} (2017) RAPFX. justincbagley/RAPFX: RAPFX version 0.1.0 [Data Set]. \textbf{Zenodo}. Available at: \href{http://doi.org/10.5281/zenodo.890870}{\tt http://doi.org/10.5281/zenodo.890870}. \\
%~\\
3. \textbf{Bagley JC} (2017) MissingDataFX. justincbagley/MissingDataFX: MissingDataFX\\
\hspace*{8mm} version 0.1.1 [Data Set]. \textbf{Zenodo}. Available at:\\ \vspace{2mm}
\hspace*{8mm}\href{http://doi.org/10.5281/zenodo.399837}{\tt http://doi.org/10.5281/zenodo.399837}. \\
%~\\
2. \textbf{Bagley JC} (2017) MAGNET. justincbagley/MAGNET: MAGNET version 0.1.4\\ \vspace{2mm}
\hspace*{8mm}[Data Set]. \textbf{Zenodo}. Available at: \href{http://doi.org/10.5281/zenodo.399054}{\tt http://doi.org/10.5281/zenodo.399054}. \\
%~\\
1. \textbf{Bagley JC} (2016) GaussClust. justincbagley/GaussClust: GaussClust version\\
\hspace*{8mm} 0.1.0 [Data Set]. \textbf{Zenodo}. Available at: \href{http://doi.org/10.5281/zenodo.231221}{\tt http://doi.org/10.5281/zenodo.231221}.
%\bigskip
%%% PRESENTATIONS AND ABSTRACTS
\section{\sc Presentations \& Contributed Abstracts}
\emph{Abbreviations:} \textsuperscript{U}undergraduate student, \textsuperscript{G}graduate student; OP, Oral Presentation; PP, Poster Presentation
%\vspace*{-.1in}
36. \textbf{Bagley JC}, Abernathy A\textsuperscript{U}, Bell L\textsuperscript{U}, Bonner RE\textsuperscript{U}, Dease LK\textsuperscript{U}, DeVaney C\textsuperscript{U}, \\
\hspace*{8mm} Glick MJ\textsuperscript{U}, Hall J\textsuperscript{U}, Hughston EA\textsuperscript{U}, Jones M\textsuperscript{U}, Jones N\textsuperscript{U}, King M\textsuperscript{U}, Morrow \\
\hspace*{8mm} K\textsuperscript{U}, Peters J\textsuperscript{U}, Prickett M\textsuperscript{U}, West C\textsuperscript{U} (2022) Predicting the responses of North- \\
\hspace*{8mm} ern Gulf of Mexico coastal dune plant communities to climate change using eco- \\
\hspace*{8mm} logical niche modeling. \textbf{American Association of Geographers (AAG) An-} \\
\hspace*{8mm} \textbf{nual Meeting 2022}, Virtual [Zoom/online], February 28 \textendash March 2. (Interna- \\
\hspace*{8mm} tional Meeting; PP). Available at:\\ \vspace{2mm} \hspace*{8mm}\href{https://github.com/justincbagley/Bagley-et-al-Dune-Plant-ENM-Poster}{\tt https://github.com/justincbagley/Bagley-et-al-Dune-Plant-ENM-Poster}\\
%~\\
35. Bonner RE\textsuperscript{U}, Dease LK\textsuperscript{U}, Hughston EA\textsuperscript{U}, \textbf{Bagley JC} (2022) Using ecologi- \\
\hspace*{8mm} cal niche modeling to predict the response of \emph{Hydrocotyle} \emph{bonariensis} to global \\
\hspace*{8mm} climate change. \textbf{American Association of Geographers (AAG) Annual} \\
\hspace*{8mm} \textbf{Meeting 2022}, Virtual [Zoom/online], February 28\textendash Mar 2. (International Meet- \\
\hspace*{8mm} ing; PP). Available at:\\ \vspace{2mm}
\hspace*{8mm}\href{https://github.com/justincbagley/Bonner-Bagley-Hbonariensis-ENM-Poster}{\tt https://github.com/justincbagley/Bonner-Bagley-Hbonariensis-ENM-Poster}\\
%~\\
34. Bonner RE\textsuperscript{U}, Dease LK\textsuperscript{U}, Hughston EA\textsuperscript{U}, \textbf{Bagley JC} (2022) Using ecological \\
\hspace*{8mm} niche modeling to predict the response of \emph{Hydrocotyle} \emph{bonariensis} to global \\
\hspace*{8mm} climate change. \textbf{JSU Student Symposium 2022}, Jacksonville State Univer- \\
\hspace*{8mm} sity Houston Cole Library, February 15\textendash 16. (University Symposium; PP)\\
\hspace*{8mm} Available at:\\ \vspace{2mm}
\hspace*{8mm}\href{https://github.com/justincbagley/Bonner-Bagley-Hbonariensis-ENM-Poster}{\tt https://github.com/justincbagley/Bonner-Bagley-Hbonariensis-ENM-Poster}\\
%~\\
33. \textbf{Bagley JC} (2021) Diversification of life at the intersection of ecology, evolution, \\
\hspace*{8mm} and Earth history. \textbf{PhylogatR Workshop}, Mountain Lake Biological \\ \vspace{2mm}
\hspace*{8mm}Station, Pembroke, VA, August 2. (Professional Meeting; OP) \\
%~\\
32. \textbf{Bagley JC} (2020) Diversification of life at the intersection of ecology, evolution, \\
\hspace*{8mm} and Earth history. \textbf{Department of Biology, Jacksonville State University}, \\ \vspace{2mm}
\hspace*{8mm}virtual, March 14. (Job Talk; OP) \\
%~\\
30. Peach LR\textsuperscript{G}, Waring KM, Ful\'{e} PZ, Swenson JK, Menon M, Eckert AJ, \textbf{Bagley JC} \\
\hspace*{8mm} (2020) Unraveling drought sensitivity via dendroecological investigation of \emph{Pinus} \\
\hspace*{8mm} \emph{strobiformis} \& \emph{P. flexilis} hybrid individuals. \textbf{Society of American Foresters} \\ \vspace{2mm}
\hspace*{8mm}\textbf{National Convention}, virtual, October 29\textendash 31. (International Meeting; PP) \\
%~\\
29. \textbf{Bagley JC}, Uribe\textendash Convers S, Carlsen MM, Muchhala N (2019) Assessing the\\
\hspace*{8mm} utility of Hyb-Seq for resolving phylogeny and introgression in rapid angiosperm\\
\hspace*{8mm} radiations: a pilot study in \emph{Burmeistera} bellflowers. \textbf{Department of Biology}\\
\hspace*{8mm} \textbf{Biolunch}, University of Missouri-St. Louis, St. Louis, MO, October 16. (Uni-\\ \vspace{2mm}
\hspace*{8mm}versity OP) \\
%~\\
28. \textbf{Bagley JC}, Uribe\textendash Convers S, Carlsen M, Muchhala N (2019) Assessing the utility\\
\hspace*{8mm} of Hyb-Seq for resolving phylogeny and introgression in rapid angiosperm radi-\\
\hspace*{8mm} ations: a pilot study in \emph{Burmeistera} bellflowers. \textbf{Evolution Meeting 2019},\\ \vspace{2mm}
\hspace*{8mm}Providence, RI, June 21\textendash 25. (International Meeting; PP) \\
%~\\
27. Calderon\textendash Acevedo C\textsuperscript{G}, \textbf{Bagley JC}, Muchhala N (2019) Genome-wide ultracon-\\
\hspace*{8mm} served elements resolve phylogenetic relationships among leaf-nosed bats in the\\
\hspace*{8mm} genus \emph{Anoura} Gray 1838. \textbf{99th Annual Meeting of the American Society}\\ \vspace{2mm}
\hspace*{8mm}\textbf{of Mammalogists}, Washington, DC, June 27\textendash July 2. (National Meeting; OP)\\
%~\\
26. Menon M\textsuperscript{G}, Page G, \textbf{Bagley JC}, Cushman S, Waring K, Whipple A, Flores\textendash \\
\hspace*{8mm} Renter\'{i}a L, Still C, Wehenkel C, Eckert AJ (2019) Introgression fuels adap-\\
\hspace*{8mm} tive evolution in range margin populations of \emph{Pinus strobiformis}. \textbf{Evolution} \\ \vspace{2mm}
\hspace*{8mm}\textbf{Meeting 2019}, Providence, RI, June 21\textendash 25. (International Meeting; OP) \\
%~\\
25. Menon M, Landguth E, Leal-S\'{a}enz A, \textbf{Bagley JC}, Wehenkel C, Waring K, Schoet-\\
\hspace*{8mm} tle A, Eckert AJ (2018) The role of hybridization during ecological divergence of \\
\hspace*{8mm} \textit{Pinus strobiformis} and \textit{P. flexilis}. \textbf{Population, Evolutionary and Quantita-}\\
\hspace*{8mm} \textbf{tive Genetics Conference} (GSA), Madison, WI, May 13\textendash 16. (International\\ \vspace{2mm}
\hspace*{8mm}Meeting; PP) \\
%~\\
24. Menon M\textsuperscript{G}, S\'{a}enz AL\textsuperscript{G}, Landguth E, \textbf{Bagley JC}, Schoettle A, Wehenkel CA,\\
\hspace*{8mm} Cushman S, Waring K, Eckert AJ (2018) Tracing the footprints of a hybrid\\
\hspace*{8mm} zone under a history of divergence with gene flow. \textbf{21st Annual Graduate Re-}\\
\hspace*{8mm} \textbf{search Symposium and Exhibit}, Virginia Commonwealth University, Rich-\\ \vspace{2mm}
\hspace*{8mm}mond, VA, April 24. (University Symposium; PP) \\
%~\\
23. \textbf{Bagley JC}, Menon M\textsuperscript{G}, Friedline C, Whipple A, Schoettle A, S\'{a}enz AL\textsuperscript{G}, We-\\
\hspace*{8mm} henkel CA, Flores-Renter\'{i}a LH, Sniezko R, Cushman S, Waring K, Eckert AJ\\
\hspace*{8mm} (2018) Population genomics and paleoclimatic modeling support speciation with\\
\hspace*{8mm} gene flow, not genomic islands of differentiation, in sky-island populations of\\
\hspace*{8mm} southwestern white pine. \textbf{International Plant \& Animal Genome Confer-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{ence XXVI}, San Diego, CA, January 13\textendash 17. (International Meeting; PP) \\
%~\\
22. \textbf{Bagley JC}, Aquino PPU, Hrbek T, Hernandez S, Langeani F, Colli GR (2017)\\
\hspace*{8mm} Using ddRAD-seq phylogeography to test for genetic effects of headwater river\\
\hspace*{8mm} capture in suckermouth armored catfish (Loricariidae: \emph{Hypostomus}) from the\\
\hspace*{8mm} central Brazilian Shield. \textbf{Evolution Meeting 2017}, Portland, OR, June 23\textendash 27.\\ \vspace{2mm}
\hspace*{8mm}(International Meeting; OP) \\
%~\\
21. \textbf{Bagley JC}, Menon M\textsuperscript{G}, Friedline C, Whipple A, Schoettle A, S\'{a}enz AL\textsuperscript{G}, We-\\
\hspace*{8mm} henkel CA, McGarvey D, Flores-Renter\'{i}a LH, Sniezko R, Cushman S, Waring\\
\hspace*{8mm} K, Eckert AJ (2017) Population genomics and paleoclimatic modeling support\\
\hspace*{8mm} speciation with gene flow, not genomic islands of differentiation, in sky-island\\
\hspace*{8mm} populations of southwestern white pine. \textbf{Evolution Meeting 2017}, Portland,\\ \vspace{2mm}
\hspace*{8mm}OR, June 23\textendash 27. (International Meeting; PP) \\
%~\\
20. Menon M\textsuperscript{G}, \textbf{Bagley JC}, Friedline C, Whipple A, Schoettle A, S\'{a}enz AL\textsuperscript{G}, We-\\
\hspace*{8mm} henkel CA, McGarvey D, Flores-Renteria LH, Sniezko R, Cushman S, Waring\\
\hspace*{8mm} K, Eckert AJ (2017) What's in a name? Ecological speciation in southwestern\\
\hspace*{8mm} white pine. \textbf{Evolution Meeting 2017}, Portland, OR, June 23\textendash 27. (Interna-\\ \vspace{2mm}
\hspace*{8mm}tional Meeting; OP) \\
%~\\
19. Ferrari TB\textsuperscript{U}, Breitman MF, Domingos F, Wiederhecker HC, \textbf{Bagley JC}, de Mello\\
\hspace*{8mm} R, de Lima T\textsuperscript{G}, Colli G (2017) Taxonomia integrative e delimita\c{c}\~{a}o de esp\'{e}cies\\
\hspace*{8mm} no Cerrado: uma nova esp\'{e}cie de \emph{Enyalius} (Squamata: Leiosauridae) endemic\\
\hspace*{8mm} do bioma. \textbf{VIII Congresso Brasileiro de Herpetologia}, Mato Grosso, Brazil.\\ \vspace{2mm}
\hspace*{8mm}(National Meeting; Abstract + OP) \\
%~\\
18. Wiederhecker HC, Breitman MF, Domingos F, \textbf{Bagley J}, Colli G (2017) Next-\\
\hspace*{8mm} Generation Teaching: ensinando ao pesquisar taxonomia integrative beneficia\\
\hspace*{8mm} estudantes e professores. \textbf{VIII Congresso Brasileiro de Herpetologia}. (Na-\\ \vspace{2mm}
\hspace*{8mm}tional Meeting; Abstract + OP) \\
%~\\
17. Aquino PPU, \textbf{Bagley JC}, Couto TBA, Figueira-Soares YF\textsuperscript{U} (2015) Sinal bio-\\
\hspace*{8mm} geogr\'{a}fico de captura de cabeceira: primeiro registro de \emph{Phalloceros harpagos}\\
\hspace*{8mm} Lucinda, 2008 (Cyprinodontiformes: Poeciliidae) em riachos da bacia do rio S\~{a}o\\
\hspace*{8mm} Francisco. \textbf{III Simp\'{o}sio de Zoologia Sistem\'{a}tica}, UFMG Campus Pam-\\
\hspace*{8mm}pulha, Belo Horizonte, Minas Gerais, Brazil, December 16\textendash 20. (Regional Meet-\\ \vspace{2mm}
\hspace*{8mm}ing; Abstract + PP) \\
%~\\
16. Unmack PJ, \textbf{Bagley JC}, Davis A, Hammer MP, Adams M, Johnson JB (2014)\\
\hspace*{8mm} Phylogeny, biogeography and evolution of the temperate perches (Percichthyi-\\
\hspace*{8mm} dae). \textbf{Australian Society for Fish Biology}, Darwin Convention Center, Dar-\\
\hspace*{8mm} win, Northern Territory, Australia, June 30\textendash July 4. (National Meeting; Abstract \\ \vspace{2mm}
\hspace*{8mm}+ PP) \\
%~\\
15. \textbf{Bagley JC}\textsuperscript{G}, Alda FA, Breitman MF, van den Berghe EP, Bermingham E, John-\\
\hspace*{8mm} son JB (2014) Who's your ``molly''? Species boundaries and cryptic diversity in\\
\hspace*{8mm} a complex of Neotropical freshwater fishes. \textbf{BYU Grad Expo}, Brigham Young\\ \vspace{2mm}
\hspace*{8mm}University, Provo, UT, U.S.A., March 25. (Invited PP) \\
%~\\
14. \textbf{Bagley JC}\textsuperscript{G} (2014) Paleoclimatic modeling and phylogeography of least killifish,\\
\hspace*{8mm} \emph{Heterandria formosa}: insights into Pleistocene expansion-contraction dynamics\\
\hspace*{8mm} along the North American Coastal Plain. \textbf{Center for Bioenvironmental Re-}\\
\hspace*{8mm} \textbf{search}, Tulane University, New Orleans, Louisiana, U.S.A., January 13. (Invited\\ \vspace{2mm}
\hspace*{8mm}OP) \\
%~\\
13. \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2013) Phylogeography of the lower Central American\\
\hspace*{8mm} Neotropics: diversification between two continents, between two seas. \textbf{Joint In-}\\
\hspace*{8mm} \textbf{ternational Meeting of Ichthyologists and Herpetologists}, Albuquerque,\\ \vspace{2mm}
\hspace*{8mm}New Mexico, U.S.A., July 9\textendash 15. (International Meeting; Abstract + OP) \\
%~\\
12. \textbf{Bagley JC}\textsuperscript{G}, Sandel M, Travis J, Lozano-Vilano M de L, Johnson JB (2013) Test-\\
\hspace*{8mm} ing biogeographic hypotheses of Plio\textemdash Pleistocene history and diversification\\
\hspace*{8mm} along the North American Gulf-Atlantic Coastal Plain in least killifish (\emph{Heteran-}\\
\hspace*{8mm} \emph{dria formosa}). \textbf{Evolution Conference}, Snowbird Resort, Salt Lake City, Utah,\\ \vspace{2mm}
\hspace*{8mm}U.S.A., June 20\textendash 25. (International Meeting; PP) \\
%~\\
11. \textbf{Bagley JC}\textsuperscript{G} (2012) Integrative comparative phylogeographical approaches to un-\\
\hspace*{8mm} derstanding evolutionary diversification in Central American freshwater fishes.\\
\hspace*{8mm} \textbf{S\~{a}o Paulo School for Advanced Science-Evolution (SPSAS-\emph{evo})}, Ilha-\\ \vspace{2mm}
\hspace*{8mm}bela, Brazil, August 19\textendash 31. (International Workshop; PP) \\
%~\\
10. \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2012) Comparative phylogeography of Central Amer-\\
\hspace*{8mm} ican freshwater fishes. \textbf{1st Joint Congress on Evolutionary Biology}, Ot-\\ \vspace{2mm}
\hspace*{8mm}tawa, Ontario, Canada, July 6\textendash 10. (International Meeting; PP) \\
%~\\
9. Lozano-Vilano M de L, \textbf{Bagley JC}\textsuperscript{G} (2010) A new species of \emph{Heterandria} from\\
\hspace*{8mm} Coahuila state, M\'{e}xico. \textbf{Annual Meeting of the Texas Academy of Sci-}\\ \vspace{2mm}
\hspace*{8mm}\textbf{ences}, Austin, Texas, U.S.A. (Abstract) \\
%~\\
8. \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2010) Do secondary freshwater fishes show congruent\\
\hspace*{8mm} responses to saltwater barriers? \textbf{Evolution 2010}, Joint Annual Meeting of the\\
\hspace*{8mm} Society for the Study of Evolution, Society of Systematic Biologists, and Ameri-\\
\hspace*{8mm} can Society of Naturalists, Portland, Oregon, U.S.A., June 25\textendash 29. (International\\ \vspace{2mm}
\hspace*{8mm}Meeting; OP) \\
%~\\
7. Nay L\textsuperscript{U}, \textbf{Bagley JC}\textsuperscript{G}, Johnson JB (2009) Life history variation in the knife-edged\\
\hspace*{8mm} livebearer, \emph{Alfaro cultratus}. \textbf{Joint International Meeting of Ichthyologists}\\
\hspace*{8mm} \textbf{and Herpetologists}, Portland, Oregon, U.S.A., July 22\textendash 27. (International\\ \vspace{2mm}
\hspace*{8mm}Meeting; Abstract + PP) \\
%~\\
6. \textbf{Bagley JC}\textsuperscript{G} (2009) Phylogenetic comparative analyses of body size and shape\\
\hspace*{8mm} variation in a diverse yet morphologically conservative clade of lungless salaman-\\
\hspace*{8mm} ders (Plethodontidae: Desmognathus). \textbf{Department of Biology Ecolunch}\\ \vspace{2mm}
\hspace*{8mm}\textbf{Seminar}, Brigham Young University, Provo, Utah, U.S.A., January 30. (OP) \\
%~\\
5. \textbf{Bagley JC}\textsuperscript{G}, Brummer T\textsuperscript{U}, Nay L\textsuperscript{U}, Johnson JB (2008) Phylogeography, geomet-\\
\hspace*{8mm} ric morphometrics, and life history variation of \emph{Alfaro cultratus} (Cyprinodonti-\\
\hspace*{8mm} formes: Poeciliidae) from Costa Rica. \textbf{Desert Fishes Council Meeting}, Cua-\\ \vspace{2mm}
\hspace*{8mm}tro Ci\'{e}negas, Mexico, November. (Annual Meeting; Abstract + PP) \\
%~\\
4. \textbf{Bagley JC}\textsuperscript{G} (2008) Polyphyly, hybridization and cryptic biodiversity among \emph{Mi-}\\
\hspace*{8mm} \emph{cropterus}. \textbf{Desert Fishes Council Meeting}, Cuatro Ci\'{e}negas, Mexico, Novem-\\ \vspace{2mm}
\hspace*{8mm}ber. (Annual Meeting; Abstract + OP) \\
%~\\
3. \textbf{Bagley JC}\textsuperscript{G} (2008) A new molecular phylogeny of the black basses, \emph{Micropterus}\\
\hspace*{8mm} (Teleostei: Centrarchidae), based on increased within-taxon sampling. \textbf{Depar-}\\
\hspace*{8mm} \textbf{tment of Biology Ecolunch Seminar}, Brigham Young University, Provo,\\ \vspace{2mm}
\hspace*{8mm}Utah, U.S.A., October 31. (OP) \\
%~\\
2. \textbf{Bagley JC}\textsuperscript{G}, Harris PM (2008) Taxonomy, population genetics and body shape\\
\hspace*{8mm} variation in Alabama spotted bass. \textbf{Joint International Meeting of Ichthy-}\\
\hspace*{8mm} \textbf{ologists and Herpetologists}, Montreal, Quebec, Canada. (International Meet-\\ \vspace{2mm}
\hspace*{8mm}ing; Abstract + OP) \\
%~\\
1. \textbf{Bagley JC}\textsuperscript{U}, Secor SM (2004) Allometry of digestive performance in the marine\\
\hspace*{8mm} toad and diamondback water snake. \textbf{Society for Integrative and Compara-}\\
\hspace*{8mm} \textbf{tive Biology Meeting}, San Diego, California, U.S.A. (Annual Meeting; Ab- \\ \vspace{2mm}
\hspace*{8mm}stract + PP)
%%%% \section{\sc Online Courses}
%\href{https://www.edx.org/course/analyze-genome-uc-san-diegox-binf180-1}{\textit{Analyze Your Genome!}} (UC San Diego \& edX, 2017 to present)\vspace{2mm}\\
%\href{https://www.coursera.org/specializations/bioinformatics}{\textit{Bioinformatics Algorithms}} (UC San Diego \& Coursera, 2015 to present)\vspace{2mm}\\
%\href{https://www.edx.org/course/data-structures-an-active-learning-approach}{\textit{Data Structures: An Active Learning Approach}} (UC San Diego \& edX, 2018 to present)\vspace{2mm}\\
%\href{https://www.edx.org/course/introduction-genomic-data-science-uc-san-diegox-cse181-1x}{\textit{Introduction to Genomic Data Science}} (UC San Diego \& edX, 2017 to present)
%%%% \section{\sc Software}
%\textbf{FAVITES:} Simulate viral transmission, phylogenetic trees, and sequences\\*\vspace{2mm}
%\hspace*{4mm} \href{https://github.com/niemasd/FAVITES}{https://github.com/niemasd/FAVITES}\\
%\textbf{ProACT:} Prioritize HIV care\\*\vspace{2mm}
%\hspace*{4mm} %\href{https://github.com/niemasd/ProACT}{https://github.com/niemasd/ProACT}\\
%\textbf{TreeCluster:} Infer transmission clusters from viral phylogenies\\*\vspace{2mm}
%\hspace*{4mm} \href{https://github.com/niemasd/TreeCluster}{https://github.com/niemasd/TreeCluster}\\
%\textbf{TreeN93:} Infer transmission clusters non-parametrically from TN93 distances\\*\vspace{2mm}
%\hspace*{4mm} \href{https://github.com/niemasd/TreeN93}{https://github.com/niemasd/TreeN93}\\
%\textbf{TreeSAP:} Simulate trees under various phylogenetic models\\*\vspace{2mm}
%\hspace*{4mm} \href{https://github.com/niemasd/TreeSAP}{https://github.com/niemasd/TreeSAP}\\
%\textbf{TreeSwift:} Parse, manipulate, and iterate over ultra-large tree structures\\*\vspace{2mm}
%\hspace*{4mm} \href{https://github.com/niemasd/TreeSwift}{https://github.com/niemasd/TreeSwift}
\section{\sc Grants \& Fellowships (Total: \$208,324)}
\begin{longtable}{@{}p{0.7in}p{4in}}
\hspace*{-4mm} \rule{-1mm}{5mm} Dec 2022 & \href{https://www.aum.edu/academics/academic-support/eeec/}{AUM Experiential Education and Engagement Center (EEEC)} \\* \hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} {\textit{Undergraduate Research and Creative Activity Award}} (\$3,680) \\
\hspace*{-4mm} \rule{-1mm}{5mm} Oct 2021 & Alabama Division of Wildlife and Freshwater Fisheries \\* \hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://www.fws.gov/endangered/grants/}{\textit{Coopertaive Endangered Species Conservation Fund}} (\$44,736) \\
\hspace*{-4mm} \rule{-1mm}{5mm} Oct 2021 & JSU Faculty Research Grant (\$3000) \\*
\hspace*{-4mm} \rule{-1mm}{5mm} Jan 2019 & \href{https://www.jfschmidt.com/aboutjfs.html/}{\textit{J. Frank Schmidt Family Charitable Foundation Grant} (\$6480)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} Sep 2014 & {\textit{Young Talent Fellow, Science Without Borders Program} (\$77,040)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{http://www.cnpq.br}{Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq), Brazil}\\
\hspace*{-4mm} \rule{-1mm}{5mm} Apr 2012 & \href{https://www.nsf.gov/publications/pub_summ.jsp?ods_key=nsf13568&org=NSF}{\textit{Doctoral Dissertation Improvement Grant} (DDIG) (\$14,040)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://www.nsf.gov}{U.S. National Science Foundation (NSF)}\\
\hspace*{-4mm} \rule{-1mm}{5mm} Aug 2012 & {\textit{Graduate Research Fellowship} (\$15,000)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://gradstudies.byu.edu/}{Graduate Studies, Brigham Young University}\\
\hspace*{-4mm} \rule{-1mm}{5mm} 2010 & \href{https://ideawild.org}{\textit{IDEA WILD Research Equipment Award} (\$800)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2010 & {\textit{Graduate Mentoring Environment Research Award} (\$5000)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{http://www.byu.edu/}{Brigham Young University}\\
\hspace*{-4mm} \rule{-1mm}{5mm} Aug 2008 & {\textit{Board of Regents Fellowship} (\$24,000; declined)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://louisiana.edu/}{University of Louisiana, Lafayette}\\
\hspace*{-4mm} \rule{-1mm}{5mm} May 2007 & \href{https://naturalhistory.si.edu/research/smithsonian-marine-station/education-and-fellowships/graduate-fellowships/link-fellowship}{\textit{LINK Foundation/Smithsonian Research Fellowship, SMSFP} (\$5548)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} Jan 2007 & {\textit{Collegiate License Tag Endowed Grad. Education Fund Fellowship} (\$19,000)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://www.ua.edu}{The University of Alabama}\\
\hspace*{-4mm} \rule{-1mm}{5mm} May 2002 & {\textit{Phi Theta Kappa Presidential Scholarship to The University of Alabama} (\$14,000)}\\*
\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{https://www.accs.edu}{Association of Alabama Two-Year Colleges}\\
\end{longtable}
%\newpage
\section{\sc Academic Honors \& Travel Awards (Total: \$5225)}
\begin{longtable}{@{}p{0.7in}p{4in}}
\hspace*{-4mm} \rule{-1mm}{5mm} Feb 2022 & Nominee, \textit{\href{http://www.etowahchamber.org}{The Chamber, Gadsden/Etowah County} Excellence in Education Award} \\*
\hspace*{-4mm} \rule{-1mm}{5mm} Oct 2021 & \textit{\href{https://phylogatr.org}{PhylogatR} Beta-Testing Workshop, Mountain Lake Biological Station, Travel Award} (\$700)\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2018 & \href{https://www.sigmaxi.org}{\textit{Full Member, Sigma Xi, The Scientific Research Society}}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2012 & \href{http://espca.fapesp.br/school/spsas_evo_____sao_paulo_school_of_advanced_science_evolution/43/}{\textit{S\~{a}o Paulo School for Advanced Science-Evolution (SPSAS-\emph{evo}) course}, S\~{a}o Paulo, Brazil (\$2500)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2009 & \href{http://www.nasonline.org/programs/nas-colloquia/}{\textit{National Academy of Sciences Sackler Colloquium Student Travel Award} (\$425)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2007 & \href{https://graduate.ua.edu}{\textit{The University of Alabama Graduate Student Association Research and Travel Support Fund Grant} (\$1000)}\\*
\hspace*{-4mm} \rule{-1mm}{5mm} 2007 & \href{https://graduate.ua.edu}{\textit{The University of Alabama Graduate School Research and Travel Fund Award} (\$600)}\\*
\end{longtable}
%%% INVITED TALKS
%\section{\sc Invited Talks}
%\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
%\hspace*{-4mm} Oct 2019 & \href{https://www.sdhacks.io/}{\textit{Keynote Talk}}\\*
%\end{longtable}
%%% CONFERENCE PRESENTATIONS
%\section{\sc Conference Presentations}
%\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
%\hspace*{-4mm} Nov 2018 & \textit{Flipping computational courses using Massive Adaptive}\\*
%\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \textit{Interactive Texts}\\*
%\hspace*{-4mm} \hspace*{-4mm} & \hspace{4mm} \href{http://meetings.cshl.edu/meetings.aspx?meet=DATA&year=18}{CSHL Biological Data Science Meeting 2018}\\
%\hspace*{-4mm} \rule{-1mm}{5mm} Sep 2018 & \textit{Open Computational Problems in HIV Epidemiology}\\*
%\end{longtable}
%%% CAMPUS TALKS
%\newpage
%\section{\sc Campus Talks}
%\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
%\hspace*{-4mm} Jan 2020 & \textit{UBIC Chalk Talk}\\*
%\hspace*{-4mm} & \hspace{4mm} \href{http://ubic.org/}{Undergraduate Bioinformatics Club (UBIC) at UC San Diego}\\
%\hspace*{-4mm} \rule{-1mm}{5mm} Dec 2019 & \textit{Hal{\i}c{\i}o{\u g}lu Data Science Institute Seminar}\\*
%\hspace*{-4mm} & \hspace{4mm} \href{https://datascience.ucsd.edu/}{Hal{\i}c{\i}o{\u g}lu Data Science Institute}\\
%\hspace*{-4mm} \rule{-1mm}{5mm} May 2019 & \textit{The Bioengineering Experience 2019}\\*
%\hspace*{-4mm} & \hspace{4mm} \href{http://bmes.ucsd.edu/}{Biomedical Engineering Society (BMES) at UC San Diego}\\
%\end{longtable}
%%% TEACHING EXPERIENCE
%\newpage
\section{\sc Teaching Experience}
\emph{Abbreviations:} Auburn University at Montgomery (AUM), Brigham Young University (BYU), The University of Alabama (UA), Universidade de Bras\'{i}lia (UnB), Virginia \\
\break
Commonwealth University (VCU), University of Missouri-St. Louis (UMSL), Jacksonville State University (JSU)
%\vspace*{-.1in}
%\vspace{3mm}
%\break
\textbf{General Biology}\\*
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://catalog.jsu.edu/undergraduate/science-mathematics/biology/#coursestext}{\textit{Introductory Biology I} (undergraduate, blended majors/non-majors)}\\*
\hspace*{8mm} Instructor, BY 101 (JSU, Spring 2022, 2 sections)\\*
\hspace*{8mm} Instructor, BY 101 (JSU, Spring 2021, 2 sections)\\*
\hspace*{8mm} Instructor, BY 101 (JSU, Fall 2020, 2 sections)\\*
\\
\rule{-1mm}{5mm} \hspace*{4mm} \href{http://catalog.byu.edu/life-sciences/biology/principles-of-biology}{\textit{Principles of Biology} (undergraduate, non-majors)}\\*
\hspace*{8mm} Student Instructor, BIO 100 (BYU, Summer 2014)\\*
\hspace*{8mm} Co-Instructor with Keith Crandall, BIO 100H Honors section (BYU, Fall 2011)\\*
\hspace*{8mm} Graduate Teaching Assistant to Duke Rogers, BIO 100 (BYU, Fall 2010)\\
\hspace*{8mm} Graduate Teaching Assistant to Richard Gill, BIO 100 (BYU, Winter 2009)\\
~\\
\rule{-1mm}{5mm} \hspace*{4mm} \href{http://catalog.byu.edu/life-sciences/biology/principles-of-biology}{\textit{Principles of Biology I Laboratory} (undergraduate)}\\*
\hspace*{8mm} Graduate Teaching Assistant to Jane Rasco, BSC 115 (UA, 2006 -- 2008)\\
~\\
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://catalog.jsu.edu/undergraduate/science-mathematics/biology/#coursestext}{\textit{Honors Principles of Biology II} (undergraduate)}\\*
\hspace*{8mm} Instructor, BY 106 (JSU, Spring 2022, 1 section)\\
~\\
\textbf{Ecology and Evolution}\\*
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://www.aum.edu/academics/catalogs/}{\textit{Ecology} (undergraduate)}\\*
\hspace*{8mm} Instructor of Record, BIOL 4200/4201 (AUM, Fall 2022 -- lecture + lab)\\
\\
\hspace*{4mm} \href{https://catalog.jsu.edu/undergraduate/science-mathematics/biology/#coursestext}{\textit{General Ecology} (undergraduate)}\\*
\hspace*{8mm} Instructor, BY 332 (JSU, Fall 2021 -- lecture + \href{https://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_177288.pdf}{CURE} lab)\\
\hspace*{8mm} Instructor, BIOL 3700 (UVU, Summer 2014)\\
\hspace*{8mm} Co-Instructor with Russell Rader, BIO 350 (BYU, Winter 2012)\\
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Evolutionary Biology Laboratory} (undergraduate)}\\*
\hspace*{8mm} Graduate Teaching Assistant to Michael Whiting, BIO 421 (BYU, Winter 2010)\\
~\\
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://catalog.jsu.edu/undergraduate/science-mathematics/biology/#coursestext}{\textit{Seminar in Systematics} (graduate)}\\*
\hspace*{8mm} Instructor, BY 577 (JSU, Fall 2020, 1 section)\\
~\\
\rule{-1mm}{5mm} \hspace*{4mm} \href{http://bulletin.umsl.edu/coursesofinstruction/biol/}{\textit{Advanced Evolution}}\\*
\hspace*{8mm} Guest Lecturer for Nathan Muchhala, BIOL 5302 (UMSL, Spring 2019)\\
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Integrative Taxonomy (with an Emphasis on Squamata)} (undergraduate + }\\*
\hspace*{4.2mm} graduate)\\*
\hspace*{8mm} Co-Instructor, BIOL 391 (VCU, Summer 2017 -- \href{https://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_177288.pdf}{CURE})\\
\hspace*{8mm} Co-Instructor, ZOO 397806 (UnB, Spring 2016 -- \href{https://sites.nationalacademies.org/cs/groups/dbassesite/documents/webpage/dbasse_177288.pdf}{CURE})\\
%\rule{-1mm}{5mm} \hspace*{4mm} {\textit{General Ecology} (undergraduate)}\\*
%\hspace*{8mm} Instructor, BIOL 3700 (UVU, Summer 2014)\\
%\hspace*{8mm} Co-Instructor with Russell Rader, BIO 350 (BYU, Winter 2012)\\
%\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Evolutionary Biology Laboratory} (undergraduate)}\\*
%\hspace*{8mm} Graduate Teaching Assistant to Michael Whiting, BIO 421 (BYU, Winter 2010)\\
%~\\
~\\
\textbf{Zoology}\\*
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://www.aum.edu/academics/catalogs/}{\textit{Zoology} (undergraduate)}\\*
\hspace*{8mm} Instructor, BIOL 2030/2031 (AUM, Fall 2022 -- lecture + lab)\\
\\
\textbf{Ichthyology}\\*
\rule{-1mm}{5mm} \hspace*{4mm} \href{https://catalog.jsu.edu/undergraduate/science/biology/#programstext}{\textit{Ichthyology} (undergraduate + graduate)}\\*
\hspace*{8mm} Instructor, BY 460 (JSU, Spring 2021, lecture + lab)\\
~\\
\textbf{Training}\\*
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{JSUOnline Online Teaching Course}}\\*
\hspace*{8mm} Faculty Participant (JSU, Fall 2020)\\
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Teaching Advancement Program (TAP) Course}}\\*
\hspace*{8mm} Graduate Student Participant (UA, 2007)\\
~\\
\textbf{Academic Advisor to Graduate Students}\\
\hspace*{8mm} Christian Braswell, M.Sc., Biology, JSU (2021 -- 2022)~\\
\\
\textbf{Early Mentoring of Students in Research} --
I mentored/am mentoring the following graduate and undergraduate students in research at Auburn University at Montgomery (AUM), Brigham Young University (BYU), Universidade de Bras\'{i}lia (UnB), Virginia Commonwealth University (VCU), and the University of Missouri-St. Louis (UMSL), or Jacksonville State University (JSU). Information is given as \textit{[student, degree/major, university, (years)]}.~\\
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Graduate Students}}\\*
%\hspace*{8mm} Christian Braswell, M.Sc., Biology, JSU (2021 -- \emph{present})\\
\hspace*{8mm} Camilo A. Calder\'{o}n\textendash Acevedo, Ph.D., Biology, UMSL (2019)\\
\hspace*{8mm} ~~~~~(research collaborator/mentee; Ph.D. advisor: N. Muchhala) \\
\rule{-1mm}{5mm} \hspace*{4mm} {\textit{Undergraduate Students}}\\*
\hspace*{8mm} Kailey Higgins, B.Sc., Marine Biology, AUM (2022 -- 2023)\\
\hspace*{8mm} Rachel Bonner, B.Sc., Biology, JSU (2021 -- 2022)\\
\hspace*{8mm} Kayla Morrow, B.Sc., Biology, JSU (2021 -- 2022)\\
\hspace*{8mm} Macee Glick, B.Sc., Biology, JSU (2021 -- 2022)\\
\hspace*{8mm} 43 Students, BY 332 Ecology CURE, JSU (Fall 2021) \\
\hspace*{8mm} Zachary Grasso, B.Sc., Biology, VCU (2018)\\
\hspace*{8mm} Samantha Moon, B.Sc., Biology, VCU (2017 -- 2018)\\
\hspace*{8mm} Ingrid Pinheiro Paschoaletto, B.Sc., Zoologia, UnB (2015 -- 2017)\\
\hspace*{8mm} Dean Trubschenck, B.Sc., Biology, BYU (2010 -- 2013)\\
\hspace*{8mm} Joseph Nelson, B.Sc., Biology, BYU (2010 -- 2012)\\
\hspace*{8mm} Zachary Panter, B.Sc., Biology, BYU (2010 -- 2013)\\
\hspace*{8mm} Lacey Nay, B.Sc., Biology, BYU (2008 -- 2009)
%%% SERVICE TO THE UNIVERSITY / COLLEGE
%\newpage
\section{\sc University Service}
\textbf{University Service Positions} (2021 -- \emph{present})\\*
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Member}, Institutional Review Board (IRB), \emph{Jacksonville State University} (2021) \\
%\vspace{2mm}
%\hspace*{4mm} [ADD CONTENT HERE] \\
\\
\textbf{College Service Positions} (2021 -- \emph{present})\\*
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Outside Member}, Inorganic Chemist Search Committee, \emph{Department of Chemistry}\\
\hspace*{4mm} \textit{and Geosciences, Jacksonville State University} (Spring 2021) \\
\\
\textbf{Department Service Positions} (2021 -- \emph{present})\\*
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Member}, Graduate Curriculum Committee, \emph{Department of Biology} (Fall 2021 -- \\
\hspace*{4mm} Spring 2022) \\
%\vspace{2mm}
%\hspace*{4mm} [ADD CONTENT HERE] \\
%\\
%%% SERVICE AS REVIEWER
%\newpage
\section{\sc Reviewer}
\textbf{Editorial Positions} (2020 -- \emph{present})\\*
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Review Editor}, Editorial Board, \emph{Frontiers in Ecology and Evolution}\\
%\vspace{2mm}
\hspace*{4mm} [section: Phylogenetics, Phylogenomics, and Systematics; Impact \\
\hspace*{4mm} factor (2019): 2.416].\\
\\
\textbf{Journal Reviews} (24, 2011 -- \emph{present})\\*
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Molecular Ecology} (4) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Ecology and Evolution} (3) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Molecular Phylogenetics and Evolution} (3) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Frontiers in Ecology and Evolution} (2) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Conservation Genetics} (2) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Systematic Biology} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Environmental Biology of Fishes} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Heredity} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Journal of Heredity} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Journal of Biogeography} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Journal of Fish Biology} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Neotropical Ichthyology} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{PeerJ} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Proceedings of the Royal Society of London B} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Scientific Reports} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Transactions of the Royal Society of South Africa} (1) \\
\rule{-1mm}{5mm} \hspace*{4mm} \textit{Zoological Journal of the Linnean Society} (1) \\
%~\\
%%% RESEARCH EXPERIENCE
%\section{\sc Research Experience}
%\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
%\hspace*{-4mm} 2016--2019 & \textit{Mathematical modeling of viral evolution and epidemiology}\\*
%\hspace*{-4mm} & \hspace{4mm} UC San Diego CSE and ECE Departments\\*
%\hspace*{-4mm} & \hspace{4mm} Advisors: Siavash Mirarab and Pavel Pevzner\\
%\hspace*{-4mm} \rule{-1mm}{5mm} 2015--2016 & \textit{Variant analysis in neurological disease}\\*
%\hspace*{-4mm} & \hspace{4mm} UC San Diego School of Medicine\\*
%\hspace*{-4mm} & \hspace{4mm} Advisor: Joe Gleeson\\
%\hspace*{-4mm} \rule{-1mm}{5mm} 2015--2016 & \textit{Viral integration and structural variation in cancer}\\*
%\hspace*{-4mm} & \hspace{4mm} UC San Diego CSE Department\\*
%\hspace*{-4mm} & \hspace{4mm} Advisor: Vineet Bafna\\
%\hspace*{-4mm} \rule{-1mm}{5mm} 2014--2016 & \textit{Computational genomics in disease}\\*
%\hspace*{-4mm} & \hspace{4mm} Scripps Institute of Oceanography, UC San Diego\\*
%\hspace*{-4mm} & \hspace{4mm} Advisor: Terry Gaasterland\\
%\hspace*{-4mm} \rule{-1mm}{5mm} 2013 & \textit{Protein structure prediction via Direct Coupling Analysis}\\*
%\hspace*{-4mm} & \hspace{4mm} Skaggs School of Pharmacy, UC San Diego\\*
%\hspace*{-4mm} & \hspace{4mm} Advisors: Andreas Prli\'{c} and Phil Bourne\\
%\hspace*{-4mm} \rule{-1mm}{5mm} 2012 & \textit{Protein structure annotation in PyMOL}\\*
%\hspace*{-4mm} & \hspace{4mm} UC San Diego Chemistry Department\\*
%\hspace*{-4mm} & \hspace{4mm} Advisor: Sara Nichols and Andrew McCammon\\
%\end{longtable}
%%% OTHER SERVICE & OUTREACH
%\section{\sc Service to Profession}
%\section{\sc University Service}
%\vspace{20mm}
\section{\sc Other Service \& Outreach}
\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
\hspace*{-4mm} April 2021 & \textit{Student Presentation Judge} \\*
\hspace*{-4mm} & \hspace{4mm} \textit{\href{https://whova.com/web/msgss_202104/}{Dauphin Island Sea Lab (DISL) MSGSO Graduate Student}}\\
\hspace*{-4mm} & \hspace{4mm} \textit{\href{https://whova.com/web/msgss_202104/}{Symposium}}\\
\hspace*{-4mm} Dec 2017 & \href{https://scientistswarning.forestry.oregonstate.edu}{\textit{World scientists' warning to humanity: A second notice.}} Signatory.\\*
\hspace*{-4mm} & \hspace{4mm} \href{https://scientistswarning.forestry.oregonstate.edu/sites/sw/files/Ripple_et_al.%20_7-31-17_scientists_warning.pdf}{\textit{BioScience}, 67(12), 1026\textendash 1028.}\\
\hspace*{-4mm} Winter 2014 & \href{https://gradstudies.byu.edu/page/grad-expo}{\textit{BYU Grad Expo}} (Department of Biology representative)\\*
\hspace*{-4mm} & \hspace{4mm} \href{https://gradstudies.byu.edu/}{Graduate Studies, Brigham Young University}\\
\hspace*{-4mm} Jun 2009 & {\textit{Day Instructor, Summer Science Fish Camp}}\\*
\hspace*{-4mm} & \hspace{4mm} Canyon Brook Private School, Provo, Utah\\
\hspace*{-4mm} Oct 2008 & \textit{\href{http://www.peter.unmack.net/trips/2008/oct.ashmead.08/}{Conservation Field Trip},} \href{http://www.pupfish.net/dsac/}{\textit{Desert Springs Action Committee} (DSAC)}\\*
\hspace*{-4mm} & \href{https://www.fws.gov/refuge/ash_meadows/}{Ash Meadows National Wildlife Refuge}\\
\hspace*{-4mm} Oct 2008 & \textit{\href{http://www.peter.unmack.net/trips/2008/oct.08.fish.samp.2/}{Course Field Trip to sample Spanish Fork River}}\\*
\hspace*{-4mm} & \hspace{4mm} \href{https://catalog.byu.edu/life-sciences/biology/ichthyology}{\textit{Ichthyology}}, BIO 220/443, Brigham Young University\\
\end{longtable}
%%% PROFESSIONAL ORGANIZATIONS
%\newpage
\section{\sc Professional Organizations}
\begin{longtable}{@{}p{0.7in}p{4in}}\rule{-1mm}{4.5mm}
\hspace*{-4mm} 2022 --\emph{present} & \href{https://community.aag.org/}{\textit{American Association of Geographers (AAG)}}\\*
\hspace*{-4mm} 2018 --\emph{present} & \href{https://www.sigmaxi.org}{\textit{Sigma Xi, The Scientific Research Society}}\\*
\hspace*{-4mm} 2014 -- 2019 & \href{https://www.aaas.org}{\textit{American Association for the Advancement of Science (AAAS)}}\\*
\hspace*{-4mm} 2010 -- 2020 & \href{https://www.systbio.org}{\textit{Society of Systematic Biologists (SSB)}}\\*
\hspace*{-4mm} 2007 --\emph{present} & \href{https://www.evolutionsociety.org/}{\textit{The Society for the Study of Evolution (SSE)}}\\*
\hspace*{-4mm} 2007 -- 2017 & \href{https://www.amnat.org/home.html/}{\textit{The American Society of Naturalists (ASN)}}\\*
\hspace*{-4mm} 2007 --\emph{present} & \href{https://asih.org}{\textit{American Society of Ichthyologists and Herpetologists (ASIH)}}\\*
%example subheading for member:
%\hspace*{-4mm} & \hspace{4mm} 2017--2019 Member\\
\end{longtable}
\newpage
%%% PROFESSIONAL ORGANIZATIONS
%\newpage
\section{\sc Professional References}
\textbf{Dr. Jerald B. Johnson (Ph.D. Advisor and Collaborator)} \\
Professor \& Co-Curator of Fishes \\
Department of Biology \& Monte L. Bean Life Science Museum \\
Brigham Young University \\
4102 LSB (Life Sciences Building) \\
Provo, UT 84602-5535, U.S.A. \\
Phone: (801)-310-4957 \\ %(801)-422-4502 \\
E-mail: \href{mailto:jerry.johnson@byu.edu}{\tt jerry.johnson@byu.edu} \\
\textbf{Dr. Keith A. Crandall (Ph.D. Committee Member and Co-Instructor)} \\
Professor and Chair\textemdash Computational Biology Institute \\
George Washington University \\
Innovation Hall, 45085 University Drive, Suite 305 \\
Ashburn, VA 20147, U.S.A. \\
Phone: (571)-553-0107 \\ % (571)-553-0146 \\
E-mail: \href{mailto:kcrandall@gwu.edu}{\tt kcrandall@gwu.edu} \\
\textbf{Dr. Andrew J. Eckert (Postdoc Advisor and Collaborator)} \\
Associate Professor \\
Department of Biology \\
Virginia Commonwealth University \\
1000 W Cary St, Rm 126 \\
Richmond, VA 23284-2012, U.S.A. \\
Phone: (804)-828-0800 \\
E-mail: \href{mailto:aeckert2@vcu.edu}{\tt aeckert2@vcu.edu} \\
\textbf{Dr. Nathan Muchhala (Postdoc Advisor and Collaborator)} \\
Associate Professor \\
Department of Biology \\
University of Missouri\textendash St. Louis \\
1 University Blvd., 223 Research Building, \\
St. Louis, MO 63121-4400, U.S.A. \\
Phone: (314) 516-6672 \\
E-mail: \href{mailto:muchhalan@umsl.edu}{\tt muchhalan@umsl.edu} \\
\bigskip
\bigskip
\bigskip
\bigskip
\bigskip
\centering
\textit{Last update:} 24 January 2023 \\
%\textit{URL:}
%\href{https://justinbagley.org/pages/cv.html }{\tt https://justinbagley.org/pages/cv.html } \\
%\href{http://bagleylab.com }{\tt http://bagleylab.com }
\end{resume}