TBD

DATA

Data is in fasta format. We use Biopython to process it. The working example pdb_seqres.txt has been downloaded from [2].

Encoding sequence data

Showcasting three approaches to encode sequence data:

• Ordinal encoding DNA sequence
• One-hot encoding DAN sequence
• DNA sequence as a "language", known as k-mer counting

REFERENCES

[1] - Demystify DNA sequencing with ML and Python [2] - RCBS Protein Data Bank