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  1. Freyja Freyja Public

    Forked from andersen-lab/Freyja

    Depth-weighted De-Mixing

    Python

  2. ncov ncov Public template

    Forked from nextstrain/ncov

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python

  3. nextclade nextclade Public

    Forked from nextstrain/nextclade

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    C++

  4. outbreak.info outbreak.info Public

    Forked from outbreak-info/outbreak.info

    During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this i…

    Vue

  5. wastewater_analysis wastewater_analysis Public

    Forked from baymlab/wastewater_analysis

    Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

    Python

  6. wastewater_sarscov2 wastewater_sarscov2 Public

    Forked from alexcritschristoph/wastewater_sarscov2

    A repository for sharing data, analyses, and results from Bay Area wastewater Sars-CoV-2 sequencing

    Jupyter Notebook