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September 19, 2023 15:45
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Nextclade

Viral genome clade assignment, mutation calling, and sequence quality checks

by Nextstrain team

🌎 clades.nextstrain.org

Animated screenshot of the application, showcasing the user interface on main page

License

CircleCI master branch CircleCI staging branch CircleCI release branch CircleCI release-cli branch Security Headers Mozilla Observatory

GitHub last commit GitHub commit activity GitHub contributors DeepScan grade

Nextclade European Galaxy server

package.json version GitHub releases Nextclade Docker image version Nextclade Docker image version

JOSS publication


Visit clades.nextstrain.org button

Documentation button Report issue button Request feature button Discuss button

πŸ“œοΈ Citation

If you use results obtained with Nextclade in a publication, please

πŸ“— Documentation

πŸ§‘β€πŸ’» Development

Read developer guide here: docs/dev/developer-guide.md

✨ Team

Nextclade is a part of Nextstrain logo Nextstrain project .

It is maintained by:

Ivan Aksamentov

Senior Software Engineer
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

Richard Neher

Principal Investigator
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

Cornelius Roemer

Staff Scientist
NeherLab, Biozentrum, University of Basel
Swiss Institute of Bioinformatics

We are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (emoji key):


Emma Hodcroft

πŸ€” ⚠️ πŸ“’ πŸ‘€

Thomas Sibley

πŸš‡ πŸ›‘οΈ

Victor Lin

πŸ’» πŸ“–

Theo Sanderson

πŸ’»

Natalie Stroud

πŸ–‹ 🌍

Alex Rubinsteyn

πŸ“–

Christopher Bottoms

πŸ“–

Finlay Maguire

πŸ“–

dnanto

πŸ’» πŸ”£

This project follows the all-contributors specification. Contributions of any kind welcome!

🏒 Sponsors

We are thankful to the following companies who supported us:

Vercel logo Vercel for sponsoring Nextclade builds on their platform

βš–οΈ License

MIT License