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Run with error #38

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YiyuCh opened this issue May 21, 2022 · 1 comment
Open

Run with error #38

YiyuCh opened this issue May 21, 2022 · 1 comment

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@YiyuCh
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YiyuCh commented May 21, 2022

Hi,
I have installed all the requirements and run SJAR in Ubuntu 20.04.
environment: python 3.7.4, Node.js v17.9.0
However, i've been having some issues. The ERROR information is listed below:
【subprocess.CalledProcessError: Command '['cwltool', '--parallel', '--outdir', './test_data/outputs/cwl/cwltool/SJARACNE_out.final', '/home/yiyu/software/anaconda3/envs/py374/lib/python3.7/site-packages/SJARACNe-0.2.1-py3.7.egg/SJARACNe/cwl/sjaracne_workflow.cwl', 'test_data/outputs/cwl/cwltool/SJARACNE_out.final/sjaracne_workflow.yml']' returned non-zero exit status 1.】
Please help me to solve the problem. Thank you!
@adamdingliang
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We would more specific information about the errors.

BTW, we are developing a Dockerfile to simplify the installation process.

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@adamdingliang @YiyuCh