Inference Area Expansion Rate Distribution

This code provides a tool for inferring the area expansion rate distribution, which governs the growth of surfaces into 3D morphology.

Any work which utilizes this code shall include the following reference:

Morikawa, K., Morita, S., Sakura, K., Maeno, A., Gotoh, H., Niimi, T. & Inoue, Y.

Unveiling the Role of Differential Growth in 3D Morphogenesis: An Inference Method to Analyze Area Expansion Rate Distribution in Biological Systems.

Journal of Theoretical Biology (2023).

https://doi.org/10.1016/j.jtbi.2023.111650 .

Dependencies

To compile this code, you will need the Eigen library.

How to make and run

make

./AER.out <directory>

example:

./AER.out example