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/******************************************************************************* | |
* This file is part of KaHyPar. | |
* | |
* Copyright (C) 2019 Sebastian Schlag <sebastian.schlag@kit.edu> | |
* | |
* KaHyPar is free software: you can redistribute it and/or modify | |
* it under the terms of the GNU General Public License as published by | |
* the Free Software Foundation, either version 3 of the License, or | |
* (at your option) any later version. | |
* | |
* KaHyPar is distributed in the hope that it will be useful, | |
* but WITHOUT ANY WARRANTY; without even the implied warranty of | |
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
* GNU General Public License for more details. | |
* | |
* You should have received a copy of the GNU General Public License | |
* along with KaHyPar. If not, see <http://www.gnu.org/licenses/>. | |
* | |
******************************************************************************/ | |
#include <pybind11/pybind11.h> | |
#include <pybind11/stl.h> | |
#include <string> | |
#include <vector> | |
#include "kahypar/definitions.h" | |
#include "kahypar/partition/context.h" | |
#include "kahypar/io/hypergraph_io.h" | |
#include "kahypar/partitioner_facade.h" | |
#include "kahypar/application/command_line_options.h" | |
#include "kahypar/datastructure/connectivity_sets.h" | |
#include "kahypar/partition/metrics.h" | |
void hello(const std::string& input) { | |
std::cout << input << std::endl; | |
} | |
void partition(kahypar::Hypergraph& hypergraph, | |
kahypar::Context& context) { | |
kahypar::PartitionerFacade().partition(hypergraph, context); | |
} | |
namespace py = pybind11; | |
PYBIND11_MODULE(kahypar, m) { | |
using kahypar::Hypergraph; | |
using kahypar::HypernodeID; | |
using kahypar::HyperedgeID; | |
using kahypar::HyperedgeIndexVector; | |
using kahypar::HyperedgeVector; | |
using kahypar::HyperedgeWeightVector; | |
using kahypar::HypernodeWeightVector; | |
using kahypar::PartitionID; | |
using ConnectivitySet = typename kahypar::ds::ConnectivitySets<PartitionID, HyperedgeID>::ConnectivitySet; | |
py::class_<Hypergraph>( | |
m, "Hypergraph") | |
.def(py::init<const HypernodeID, | |
const HyperedgeID, | |
const HyperedgeIndexVector, | |
const HyperedgeVector, | |
const PartitionID>(),R"pbdoc( | |
Construct an unweighted hypergraph. | |
:param HypernodeID num_nodes: Number of nodes | |
:param HyperedgeID num_edges: Number of hyperedges | |
:param HyperedgeIndexVector index_vector: Starting indices for each hyperedge | |
:param HyperedgeVector edge_vector: Vector containing all hyperedges | |
:param PartitionID k: Number of blocks in which the hypergraph should be partitioned | |
)pbdoc", | |
py::arg("num_nodes"), | |
py::arg("num_edges"), | |
py::arg("index_vector"), | |
py::arg("edge_vector"), | |
py::arg("k")) | |
.def(py::init<const HypernodeID, | |
const HyperedgeID, | |
const HyperedgeIndexVector, | |
const HyperedgeVector, | |
const PartitionID, | |
const HyperedgeWeightVector, | |
const HypernodeWeightVector>(),R"pbdoc( | |
Construct a hypergraph with node and edge weights. | |
If only one type of weights is required, the other argument has to be an empty list. | |
:param HypernodeID num_nodes: Number of nodes | |
:param HyperedgeID num_edges: Number of hyperedges | |
:param HyperedgeIndexVector index_vector: Starting indices for each hyperedge | |
:param HyperedgeVector edge_vector: Vector containing all hyperedges | |
:param PartitionID k: Number of blocks in which the hypergraph should be partitioned | |
:param HyperedgeWeightVector edge_weights: Weights of all hyperedges | |
:param HypernodeWeightVector node_weights: Weights of all hypernodes | |
)pbdoc", | |
py::arg("num_nodes"), | |
py::arg("num_edges"), | |
py::arg("index_vector"), | |
py::arg("edge_vector"), | |
py::arg("k"), | |
py::arg("edge_weights"), | |
py::arg("node_weights")) | |
.def("printGraphState", &Hypergraph::printGraphState, | |
"Print the hypergraph state (for debugging purposes)") | |
.def("nodeDegree", &Hypergraph::nodeDegree, | |
"Get the degree of the node", | |
py::arg("node")) | |
.def("edgeSize", &Hypergraph::edgeSize, | |
"Get the size of the hyperedge", | |
py::arg("hyperedge")) | |
.def("nodeWeight", &Hypergraph::nodeWeight, | |
"Get the weight of the node", | |
py::arg("node")) | |
.def("edgeWeight", &Hypergraph::edgeWeight, | |
"Get the weight of the hyperedge", | |
py::arg("hyperedge")) | |
.def("blockID", &Hypergraph::partID, | |
"Get the block of the node in the current hypergraph partition (before partitioning: -1)", | |
py::arg("node")) | |
.def("numNodes", &Hypergraph::initialNumNodes, | |
"Get the number of nodes") | |
.def("numEdges", &Hypergraph::initialNumEdges, | |
"Get the number of hyperedges") | |
.def("numPins", &Hypergraph::initialNumPins, | |
"Get the number of pins") | |
.def("numBlocks", &Hypergraph::k, | |
"Get the number of blocks") | |
.def("numPinsInBlock", &Hypergraph::pinCountInPart, | |
"Get the number of pins of the hyperedge that are assigned to corresponding block", | |
py::arg("hyperedge"), | |
py::arg("block")) | |
.def("connectivity", &Hypergraph::connectivity, | |
"Get the connecivity of the hyperedge (i.e., the number of blocks which contain at least one pin)", | |
py::arg("hyperedge")) | |
.def("connectivitySet", &Hypergraph::connectivitySet, py::return_value_policy::reference_internal, | |
"Get the connectivity set of the hyperedge", | |
py::arg("hyperedge")) | |
.def("communities", &Hypergraph::communities, | |
"Get the community structure") | |
.def("blockWeight", &Hypergraph::partWeight, | |
"Get the weight of the block", | |
py::arg("block")) | |
.def("blockSize", &Hypergraph::partSize, | |
"Get the number of vertices in the block", | |
py::arg("block")) | |
.def("reset", &Hypergraph::reset, | |
"Reset the hypergraph to its initial state") | |
.def("fixNodeToBlock", &Hypergraph::setFixedVertex, | |
"Fix node to the cooresponding block", | |
py::arg("node"), py::arg("block")) | |
.def("numFixedNodes", &Hypergraph::numFixedVertices, | |
"Get the number of fixed nodes in the hypergraph") | |
.def("containsFixedNodex", &Hypergraph::containsFixedVertices, | |
"Return true if the hypergraph contains nodes fixed to a specific block") | |
.def("isFixedNode", &Hypergraph::isFixedVertex, | |
"Return true if the node is fixed to a block", | |
py::arg("node")) | |
.def("nodes", [](Hypergraph &h) { | |
return py::make_iterator(h.nodes().first,h.nodes().second);}, py::keep_alive<0, 1>(), | |
"Iterate over all nodes") | |
.def("edges", [](Hypergraph &h) { | |
return py::make_iterator(h.edges().first,h.edges().second);}, py::keep_alive<0, 1>(), | |
"Iterate over all hyperedges") | |
.def("pins", [](Hypergraph &h, HyperedgeID he) { | |
return py::make_iterator(h.pins(he).first,h.pins(he).second);}, py::keep_alive<0, 1>(), | |
"Iterate over all pins of the hyperedge", | |
py::arg("hyperedge")) | |
.def("incidentEdges", [](Hypergraph &h, HypernodeID hn) { | |
return py::make_iterator(h.incidentEdges(hn).first,h.incidentEdges(hn).second);}, py::keep_alive<0, 1>(), | |
"Iterate over all incident hyperedges of the node", | |
py::arg("node")); | |
py::class_<ConnectivitySet>(m, | |
"Connectivity Set") | |
.def("contains",&ConnectivitySet::contains, | |
"Check if the block is contained in the connectivity set of the hyperedge", | |
py::arg("block")) | |
.def("__iter__", | |
[](const ConnectivitySet& con) { | |
return py::make_iterator(con.begin(),con.end()); | |
},py::keep_alive<0, 1>(), | |
"Iterate over all blocks contained in the connectivity set of the hyperedge"); | |
m.def( | |
"createHypergraphFromFile", &kahypar::io::createHypergraphFromFile, | |
"Construct a hypergraph from a file in hMETIS format", | |
py::arg("filename"), py::arg("k")); | |
m.def( | |
"partition", &partition, | |
"Compute a k-way partition of the hypergraph", | |
py::arg("hypergraph"), py::arg("context")); | |
m.def( | |
"cut", &kahypar::metrics::hyperedgeCut, | |
"Compute the cut-net metric for the partitioned hypergraph", | |
py::arg("hypergraph")); | |
m.def( | |
"soed", &kahypar::metrics::soed, | |
"Compute the sum-of-extrnal-degrees metric for the partitioned hypergraph", | |
py::arg("hypergraph")); | |
m.def( | |
"connectivityMinusOne", &kahypar::metrics::km1, | |
"Compute the connecivity metric for the partitioned hypergraph", | |
py::arg("hypergraph")); | |
m.def( | |
"imbalance", &kahypar::metrics::imbalance, | |
"Compute the imbalance of the hypergraph partition", | |
py::arg("hypergraph"),py::arg("context")); | |
using kahypar::Context; | |
py::class_<Context>( | |
m, "Context") | |
.def(py::init<>()) | |
.def("setK",[](Context& c, const PartitionID k) { | |
c.partition.k = k; | |
}, | |
"Number of blocks the hypergraph should be partitioned into", | |
py::arg("k")) | |
.def("setEpsilon",[](Context& c, const double eps) { | |
c.partition.epsilon = eps; | |
}, | |
"Allowed imbalance epsilon", | |
py::arg("imbalance parameter epsilon")) | |
.def("setCustomTargetBlockWeights", | |
[](Context& c, const std::vector<kahypar::HypernodeWeight>& custom_target_weights) { | |
c.partition.use_individual_part_weights = true; | |
c.partition.max_part_weights.clear(); | |
for ( size_t block = 0; block < custom_target_weights.size(); ++block ) { | |
c.partition.max_part_weights.push_back(custom_target_weights[block]); | |
} | |
}, | |
"Assigns each block of the partition an individual maximum allowed block weight", | |
py::arg("custom target block weights")) | |
.def("setSeed",[](Context& c, const int seed) { | |
c.partition.seed = seed; | |
}, | |
"Seed for the random number generator", | |
py::arg("seed")) | |
.def("suppressOutput",[](Context& c, const bool decision) { | |
c.partition.quiet_mode = decision; | |
}, | |
"Suppress partitioning output", | |
py::arg("bool")) | |
.def("loadINIconfiguration", | |
[](Context& c, const std::string& path) { | |
parseIniToContext(c, path); | |
}, | |
"Read KaHyPar configuration from file", | |
py::arg("path-to-file") | |
); | |
#ifdef VERSION_INFO | |
m.attr("__version__") = VERSION_INFO; | |
#else | |
m.attr("__version__") = "dev"; | |
#endif | |
} |