#DeepECtransformer ##Procedure
Note: This source code was developed in Linux, and has been tested in Ubuntu 16.04 with Python 3.6.
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Clone the repository
git clone https://github.com/kaistsystemsbiology/DeepProZyme.git
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Create and activate virtual environment (takes 5~10 min)
conda env create -f environment.yml conda activate deepectransformer
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To use gpus properly, install the pytorch and cuda for your gpus. This code was tested on pytorch=1.7.0 using cuda version 10.2
##Example
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Run DeepECtransformer (takes < 1 min)
python run_deepectransformer.py -i ./example/mdh_ecoli.fa -o ./example/results -g cpu -b 128 -cpu 2 python run_deepectransformer.py -i ./example/mdh_ecoli.fa -o ./example/results -g cuda:3 -b 128 -cpu 2