You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
$ ./attotree \
-t 8 \
-L <(head -n 501 ngono.list) \
-o ngono.n501.nw
[attotree] 2024-04-09 01:39:41 Attotree starting
Traceback (most recent call last):
File "/Users/karel/github/my/attotree-paper/experiments/01_scaling_time/./attotree", line 461, in <module>
main()
File "/Users/karel/github/my/attotree-paper/experiments/01_scaling_time/./attotree", line 452, in main
attotree(
File "/Users/karel/github/my/attotree-paper/experiments/01_scaling_time/./attotree", line 298, in attotree
with tempfile.TemporaryDirectory(delete=not debug) as d:
TypeError: TemporaryDirectory.__init__() got an unexpected keyword argument 'delete'
[Tue Apr 9 01:39:41 2024]
Error in rule attotree:
jobid: 31
input: ngono.list
output: ngono.n501.nw
shell:
./attotree \
-t 8 \
-L <(head -n 501 ngono.list) \
-o ngono.n501.nw
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Removing output files of failed job attotree since they might be corrupted:
ngono.n501.nw
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2024-04-09T013940.592027.snakemake.log
WorkflowError:
At least one job did not complete successfully.
make: *** [all] Error 1
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: