MiniPhy 0.4.0

Bug fixes

• Make attotree read the list of input files to prevent errors related to too long commands
• Fix int conversion for batching arguments

Improvements

• Add support for passing cluster-related arguments to Snakemake
• Simplify handling .conda in tests by
• Improve GH Actions testing with various combinations of Snakemake and Python

Full Changelog

• v0.3.0...v0.4.0

MiniPhy 0.3.0

New features:

• Add batching scripts
• Add possibility to configure the number of threads

Fixes:

• Fix issues with newer versions of Snakemake and the deprecation of snakemake.workflow.srcdir

Minor updates

• Simplify testing and use a single config
• Add make bigtest for testing all three protocols, while make test now defaults only to the basic protocol

Full changelog

v0.2.0...v0.3.0

MiniPhy 0.2.0

Major improvement of the entire MiniPhy package, with an expanded documentation and reproducibility.

Full changelog

v0.1.0...v0.2.0

MiniPhy 0.1.0

Initial release (former name: MOF-Compress 0.1.0)