Fix

karel-brinda · Jun 27, 2018 · 9d99e0c · 9d99e0c
1 parent 386d076
commit 9d99e0c
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Showing 5 changed files with 5 additions and 5 deletions.
diff --git a/rnftools/mishmash/ArtIllumina.py b/rnftools/mishmash/ArtIllumina.py
@@ -105,7 +105,7 @@ def create_fq(self):
 		else:
 			# generate at least number_of_read_tuples reads
 			genome_size = os.stat(self._fa_fn).st_size
-			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples)
+			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples))
 
 			if self._reads_in_tuple == 2:
 				paired_params = "-p -m {dist} -s {dist_dev}".format(

diff --git a/rnftools/mishmash/CuReSim.py b/rnftools/mishmash/CuReSim.py
@@ -94,7 +94,7 @@ def create_fq(self):
 		else:
 			# generate at least number_of_read_tuples reads
 			genome_size = os.stat(self._fa_fn).st_size
-			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples)
+			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples))
 
 			if self.random_reads:
 				no_normal_reads=1

diff --git a/rnftools/mishmash/DwgSim.py b/rnftools/mishmash/DwgSim.py
@@ -135,7 +135,7 @@ def create_fq(self):
 		else:
 			# generate at least number_of_read_tuples reads
 			genome_size = os.stat(self._fa_fn).st_size
-			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples)
+			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples))
 
 			if self._reads_in_tuple == 2:
 				paired_params = "-d {dist} -s {dist_dev}".format(

diff --git a/rnftools/mishmash/MasonIllumina.py b/rnftools/mishmash/MasonIllumina.py
@@ -100,7 +100,7 @@ def create_fq(self):
 		else:
 			# generate at least number_of_read_tuples reads
 			genome_size = os.stat(self._fa_fn).st_size
-			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples)
+			self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples))
 
 			if self._reads_in_tuple == 2:
 				paired_params = '--fragment-mean-size {dist} --fragment-size-std-dev {dist_dev} -or "{fq2}"'.format(

diff --git a/rnftools/mishmash/WgSim.py b/rnftools/mishmash/WgSim.py
@@ -108,7 +108,7 @@ def get_output(self):
 	def create_fq(self):
 		# generate at least number_of_read_tuples reads
 		genome_size = os.stat(self._fa_fn).st_size
-		self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples)
+		self.number_of_read_tuples = max(int(self.coverage * genome_size / (self.read_length_1 + self.read_length_2), self.number_of_read_tuples))
 
 		if self._reads_in_tuple == 2:
 			paired_params = "-d {dist} -s {dist_dev}".format(