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Hi there !
First of all I would like toi warmly thank you for this awesome tool.
While using it to perform some MFA output explorations (MFA generated with FactoMineR) I notice the following error with fviz_mfa_var().
It is easy to reproduce following the using the code chunk provided in the help page of fviz_mfa().
library("FactoMineR") library("factoextra") data(wine) res.mfa <- MFA(wine, group=c(2,5,3,10,9,2), type=c("n",rep("s",5)), ncp=5, name.group=c("orig","olf","vis","olfag","gust","ens"), num.group.sup=c(1,6), graph=FALSE) # Quantitative variables fviz_mfa_var(res.mfa, "quanti.var", palette = "jco", col.var.sup = "violet", repel = TRUE) **Error in `[.data.frame`(X$call$X, rownames(ind), grp, drop = FALSE) : undefined columns selected** session_info() - Session info ----------------------------------------------------------------------------------------------------------------------- setting value version R version 3.6.1 (2019-07-05) os Windows >= 8 x64 system x86_64, mingw32 ui RStudio language (EN) collate French_France.1252 ctype French_France.1252 tz Europe/Paris date 2019-09-05 - Packages --------------------------------------------------------------------------------------------------------------------------- ! package * version date lib source assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.6.1) backports 1.1.4 2019-04-10 [1] CRAN (R 3.6.0) beeswarm 0.2.3 2016-04-25 [1] CRAN (R 3.6.0) Biobase * 2.44.0 2019-05-02 [1] Bioconductor BiocGenerics * 0.30.0 2019-05-02 [1] Bioconductor BiocParallel * 1.18.1 2019-08-06 [1] Bioconductor bitops 1.0-6 2013-08-17 [1] CRAN (R 3.6.0) callr 3.3.1 2019-07-18 [1] CRAN (R 3.6.1) cli 1.1.0 2019-03-19 [1] CRAN (R 3.6.1) cluster 2.1.0 2019-06-19 [1] CRAN (R 3.6.1) codetools 0.2-16 2018-12-24 [1] CRAN (R 3.6.1) colorspace 1.4-1 2019-03-18 [1] CRAN (R 3.6.1) corpcor 1.6.9 2017-04-01 [1] CRAN (R 3.6.0) corrplot 0.84 2017-10-16 [1] CRAN (R 3.6.1) cowplot 1.0.0 2019-07-11 [1] CRAN (R 3.6.1) crayon 1.3.4 2017-09-16 [1] CRAN (R 3.6.1) curl 4.0 2019-07-22 [1] CRAN (R 3.6.1) DelayedArray * 0.10.0 2019-05-02 [1] Bioconductor desc 1.2.0 2018-05-01 [1] CRAN (R 3.6.1) devtools * 2.1.0 2019-07-06 [1] CRAN (R 3.6.1) digest 0.6.20 2019-07-04 [1] CRAN (R 3.6.1) doParallel 1.0.15 2019-08-02 [1] CRAN (R 3.6.1) dplyr * 0.8.3 2019-07-04 [1] CRAN (R 3.6.1) ellipse 0.4.1 2018-01-05 [1] CRAN (R 3.6.1) V factoextra * 1.0.5 2019-09-05 [1] Github (kassambara/factoextra@8736d0b) FactoMineR * 1.42 2019-07-03 [1] CRAN (R 3.6.1) flashClust 1.01-2 2012-08-21 [1] CRAN (R 3.6.0) foreach 1.4.7 2019-07-27 [1] CRAN (R 3.6.1) fs 1.3.1 2019-05-06 [1] CRAN (R 3.6.1) GenomeInfoDb * 1.20.0 2019-05-02 [1] Bioconductor GenomeInfoDbData 1.2.1 2019-08-12 [1] Bioconductor GenomicRanges * 1.36.0 2019-05-02 [1] Bioconductor ggbeeswarm 0.6.0 2017-08-07 [1] CRAN (R 3.6.1) ggplot2 * 3.2.1 2019-08-10 [1] CRAN (R 3.6.1) ggpubr 0.2.3 2019-09-03 [1] CRAN (R 3.6.1) ggrepel 0.8.1 2019-05-07 [1] CRAN (R 3.6.1) ggsignif 0.6.0 2019-08-08 [1] CRAN (R 3.6.1) glue 1.3.1 2019-03-12 [1] CRAN (R 3.6.1) gridExtra 2.3 2017-09-09 [1] CRAN (R 3.6.1) gtable 0.3.0 2019-03-25 [1] CRAN (R 3.6.1) igraph 1.2.4.1 2019-04-22 [1] CRAN (R 3.6.1) IRanges * 2.18.1 2019-05-31 [1] Bioconductor iterators 1.0.12 2019-07-26 [1] CRAN (R 3.6.1) jsonlite 1.6 2018-12-07 [1] CRAN (R 3.6.1) knitr 1.24 2019-08-08 [1] CRAN (R 3.6.1) labeling 0.3 2014-08-23 [1] CRAN (R 3.6.0) lattice * 0.20-38 2018-11-04 [1] CRAN (R 3.6.1) lazyeval 0.2.2 2019-03-15 [1] CRAN (R 3.6.1) leaps 3.0 2017-01-10 [1] CRAN (R 3.6.1) magrittr 1.5 2014-11-22 [1] CRAN (R 3.6.1) MASS * 7.3-51.4 2019-03-31 [1] CRAN (R 3.6.1) Matrix 1.2-17 2019-03-22 [1] CRAN (R 3.6.1) matrixStats * 0.54.0 2018-07-23 [1] CRAN (R 3.6.1) memoise 1.1.0 2017-04-21 [1] CRAN (R 3.6.1) mixOmics * 6.8.1 2017-02-06 [1] Github (mixOmicsTeam/mixOmics@0754a80) MOFA * 1.0.0 2019-05-02 [1] Bioconductor MultiAssayExperiment * 1.10.4 2019-05-20 [1] Bioconductor munsell 0.5.0 2018-06-12 [1] CRAN (R 3.6.1) pheatmap * 1.0.12 2019-01-04 [1] CRAN (R 3.6.1) pillar 1.4.2 2019-06-29 [1] CRAN (R 3.6.1) pkgbuild 1.0.5 2019-08-26 [1] CRAN (R 3.6.1) pkgconfig 2.0.2 2018-08-16 [1] CRAN (R 3.6.1) pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.6.1) plyr 1.8.4 2016-06-08 [1] CRAN (R 3.6.1) prettyunits 1.0.2 2015-07-13 [1] CRAN (R 3.6.1) processx 3.4.1 2019-07-18 [1] CRAN (R 3.6.1) ps 1.3.0 2018-12-21 [1] CRAN (R 3.6.1) purrr 0.3.2 2019-03-15 [1] CRAN (R 3.6.1) R6 2.4.0 2019-02-14 [1] CRAN (R 3.6.1) rARPACK 0.11-0 2016-03-10 [1] CRAN (R 3.6.1) RColorBrewer 1.1-2 2014-12-07 [1] CRAN (R 3.6.0) Rcpp 1.0.2 2019-07-25 [1] CRAN (R 3.6.1) RCurl 1.95-4.12 2019-03-04 [1] CRAN (R 3.6.0) remotes 2.1.0 2019-06-24 [1] CRAN (R 3.6.1) reshape * 0.8.8 2018-10-23 [1] CRAN (R 3.6.1) reshape2 1.4.3 2017-12-11 [1] CRAN (R 3.6.1) reticulate 1.13 2019-07-24 [1] CRAN (R 3.6.1) rhdf5 2.28.0 2019-05-02 [1] Bioconductor Rhdf5lib 1.6.0 2019-05-02 [1] Bioconductor rlang 0.4.0 2019-06-25 [1] CRAN (R 3.6.1) rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.6.1) RSpectra 0.15-0 2019-06-11 [1] CRAN (R 3.6.1) rstudioapi 0.10 2019-03-19 [1] CRAN (R 3.6.1) S4Vectors * 0.22.0 2019-05-02 [1] Bioconductor scales 1.0.0 2018-08-09 [1] CRAN (R 3.6.1) scatterplot3d 0.3-41 2018-03-14 [1] CRAN (R 3.6.0) sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.6.1) snow 0.4-3 2018-09-14 [1] CRAN (R 3.6.0) stringi 1.4.3 2019-03-12 [1] CRAN (R 3.6.0) stringr 1.4.0 2019-02-10 [1] CRAN (R 3.6.1) SummarizedExperiment * 1.14.1 2019-07-31 [1] Bioconductor testthat 2.2.1 2019-07-25 [1] CRAN (R 3.6.1) tibble 2.1.3 2019-06-06 [1] CRAN (R 3.6.1) tidyr 0.8.3 2019-03-01 [1] CRAN (R 3.6.1) tidyselect 0.2.5 2018-10-11 [1] CRAN (R 3.6.1) usethis * 1.5.1 2019-07-04 [1] CRAN (R 3.6.1) vipor 0.4.5 2017-03-22 [1] CRAN (R 3.6.1) withr 2.1.2 2018-03-15 [1] CRAN (R 3.6.1) xfun 0.9 2019-08-21 [1] CRAN (R 3.6.1) XVector 0.24.0 2019-05-02 [1] Bioconductor yaml 2.2.0 2018-07-25 [1] CRAN (R 3.6.0) zlibbioc 1.30.0 2019-05-02 [1] Bioconductor
Thanks a lot and have a nice day !
Pef
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Hi there !
First of all I would like toi warmly thank you for this awesome tool.
While using it to perform some MFA output explorations (MFA generated with FactoMineR) I notice the following error with fviz_mfa_var().
It is easy to reproduce following the using the code chunk provided in the help page of fviz_mfa().
Thanks a lot and have a nice day !
Pef
The text was updated successfully, but these errors were encountered: