Example 2 under 'line plots' in the 'Plot Means/Medians and Error Bars' section of sthda website is not reproducible

[JesseRop]

The code below does not generate standard_error bars around the mean of the variable grouped by color as shown in the example on the sthda webpage [http://www.sthda.com/english/articles/24-ggpubr-publication-ready-plots/79-plot-meansmedians-and-error-bars/]

ggline(ToothGrowth, x = "dose", y = "len", add = c("mean_se", "jitter"), color = "supp", palette = "jco")

[kassambara]

This was a bug, fixed now, thanks! Please install the latest developmental version and try this:

library(ggpubr)
ggline(ToothGrowth, x = "dose", y = "len", 
       add = c("mean_se", "jitter"), 
       color = "supp", palette = "jco"
)

[Induriel]

Hi, it does still not work for me. Instead of showing the errorbars of each grouping, it shows the errorbar for the whole group. I used exactly the same code as you just mentioned and I get this:

(also downloaded the newest dev-package, just to be sure)

Thanks a lot for your work, its a great package :-)

[kassambara]

It works for me, make sure you have the latest version. If it fails, please, provide the output of devtools::session_info()

[Induriel]

I checked that all the versions are up to date, still getting the same graph.
Because I'm using RStudio, I run the same code in the "normal" R-Console. Same thing :-(

Here is the code and Session info:

library(ggpubr)
Loading required package: ggplot2
Loading required package: magrittr
ggline(ToothGrowth, x = "dose", y = "len",
add = c("mean_se", "jitter"),
color = "supp", palette = "jco")
devtools::session_info()

Session info ---------------------------------------------------------------
setting value
version R version 3.5.1 (2018-07-02)
os Windows 8.1 x64
system x86_64, mingw32
ui Rgui
language (EN)
collate English_United Kingdom.1252
ctype English_United Kingdom.1252
tz Europe/London
date 2018-11-08

Packages -------------------------------------------------------------------
package * version date lib source
assertthat 0.2.0 2017-04-11 [1] CRAN (R 3.5.1)
backports 1.1.2 2017-12-13 [1] CRAN (R 3.5.0)
base64enc 0.1-3 2015-07-28 [1] CRAN (R 3.5.0)
bindr 0.1.1 2018-03-13 [1] CRAN (R 3.5.1)
bindrcpp 0.2.2 2018-03-29 [1] CRAN (R 3.5.1)
callr 3.0.0 2018-08-24 [1] CRAN (R 3.5.1)
cli 1.0.1 2018-09-25 [1] CRAN (R 3.5.1)
colorspace 1.3-2 2016-12-14 [1] CRAN (R 3.5.1)
crayon 1.3.4 2017-09-16 [1] CRAN (R 3.5.1)
desc 1.2.0 2018-05-01 [1] CRAN (R 3.5.1)
devtools 2.0.1 2018-10-26 [1] CRAN (R 3.5.1)
digest 0.6.18 2018-10-10 [1] CRAN (R 3.5.1)
dplyr 0.7.7 2018-10-16 [1] CRAN (R 3.5.1)
fs 1.2.6 2018-08-23 [1] CRAN (R 3.5.1)
ggplot2 * 3.1.0 2018-10-25 [1] CRAN (R 3.5.1)
ggpubr * 0.1.8 2018-08-30 [1] CRAN (R 3.5.1)
ggsci 2.9 2018-05-14 [1] CRAN (R 3.5.1)
glue 1.3.0 2018-07-17 [1] CRAN (R 3.5.1)
gtable 0.2.0 2016-02-26 [1] CRAN (R 3.5.1)
labeling 0.3 2014-08-23 [1] CRAN (R 3.5.0)
lazyeval 0.2.1 2017-10-29 [1] CRAN (R 3.5.1)
magrittr * 1.5 2014-11-22 [1] CRAN (R 3.5.1)
memoise 1.1.0 2017-04-21 [1] CRAN (R 3.5.1)
munsell 0.5.0 2018-06-12 [1] CRAN (R 3.5.1)
pillar 1.3.0 2018-07-14 [1] CRAN (R 3.5.1)
pkgbuild 1.0.2 2018-10-16 [1] CRAN (R 3.5.1)
pkgconfig 2.0.2 2018-08-16 [1] CRAN (R 3.5.1)
pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.5.1)
plyr 1.8.4 2016-06-08 [1] CRAN (R 3.5.1)
prettyunits 1.0.2 2015-07-13 [1] CRAN (R 3.5.1)
processx 3.2.0 2018-08-16 [1] CRAN (R 3.5.1)
ps 1.2.1 2018-11-06 [1] CRAN (R 3.5.1)
purrr 0.2.5 2018-05-29 [1] CRAN (R 3.5.1)
R6 2.3.0 2018-10-04 [1] CRAN (R 3.5.1)
Rcpp 0.12.19 2018-10-01 [1] CRAN (R 3.5.1)
remotes 2.0.2 2018-10-30 [1] CRAN (R 3.5.1)
rlang 0.3.0.1 2018-10-25 [1] CRAN (R 3.5.1)
rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.5.1)
scales 1.0.0 2018-08-09 [1] CRAN (R 3.5.1)
sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.5.1)
tibble 1.4.2 2018-01-22 [1] CRAN (R 3.5.1)
tidyselect 0.2.5 2018-10-11 [1] CRAN (R 3.5.1)
usethis 1.4.0 2018-08-14 [1] CRAN (R 3.5.1)
withr 2.1.2 2018-03-15 [1] CRAN (R 3.5.1)

[1] C:/ResearchSoftware/R/R-3.5.1/library

[kassambara]

I can see that you have the latest CRAN release of ggpubr.

Kindly install the latest developmental version of ggpubr as follow:

devtools::install_github("kassambara/ggpubr")

It should work after the installation

[Induriel]

You're a STAR! Thank you so much, it works perfectly now 🥇