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Neisseria Gonorrhoeae #136

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Kanyerezi30 opened this issue Aug 12, 2021 · 0 comments
Open

Neisseria Gonorrhoeae #136

Kanyerezi30 opened this issue Aug 12, 2021 · 0 comments

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@Kanyerezi30
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I am trying to use getmlst.py to perform the step below for Neisseria Gonorrhoeae while following the description in the example on this repo but i get No species matched your query

(ii) a fasta sequence database to match to. For MLST, this means a fasta file of all allele sequences. If you want to assign STs, you also need a tab-delim file which defines the ST profiles as a combination of alleles. You can retrieve these files automatically from pubmlst.org/data/ using the script provided:

Command used: getmlst.py --species "Neisseria Gonorrhoeae"

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