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24 Open 97 Closed
24 Open 97 Closed
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Issues list

Allele typing error
#146 opened Apr 12, 2024 by sydelstan
Latest version of bowtie2
#145 opened Mar 18, 2024 by lskatz
custom databases - manual intervention required to complete code for sequence reads
#144 opened Jan 30, 2024 by pjbiggs
Github and Conda version inconsistencies
#143 opened Jan 29, 2024 by jvhagey
Error in output when a gene contains a parentheses
#142 opened Dec 13, 2023 by nvlachos
confusing or incorrect scoring leads to mis-called allele
#141 opened Aug 23, 2023 by mikeyweigand
Indel variation in reference alleles lead to sporadic ST miscalls for S. aureus
#140 opened Dec 12, 2022 by keyfm
SyntaxError when running srst2
#139 opened Oct 12, 2022 by cpavloud
1
urllib2.URLError:
#138 opened May 13, 2022 by jvhagey
output
#137 opened Mar 18, 2022 by daoerxianqiao
Neisseria Gonorrhoeae
#136 opened Aug 12, 2021 by Kanyerezi30
Gene typing gene results contain last hit of the list and not the best hit
#131 opened Sep 26, 2020 by mdiricks
Please port to Python3
#122 opened Sep 2, 2019 by tillea
2
VFDB Parse the cluster output and tabulate the results using the specific Virulence gene DB compatible script:
#115 opened Jan 22, 2019 by aslangabriel
3
list index out of range with srst2.py
#113 opened Oct 29, 2018 by anuravi1234
3
Add --label option instead of guessing from read filenames enhancement
#109 opened Jul 25, 2018 by tseemann
Cannot parse strain name when '.' in file path
#99 opened Nov 28, 2017 by Takadonet
3
grep gene db syntax error
#92 opened Aug 28, 2017 by IshwaryaMullaiSelvapandian
1
creating srst2 executable
#82 opened Mar 23, 2017 by najoshi
2
read depth calculation
#80 opened Mar 16, 2017 by abrozzi
2
ValueError("Inputs must not be empty") when running srst2 invoking --input_pe
#74 opened Jan 4, 2017 by lilipeng
1
Different MLST result when re-running SRST2 after adding in new alleles
#73 opened Nov 15, 2016 by swlong
3
SRST2 installation problem with multiple Bowtie versions
#53 opened Jan 15, 2016 by patms
1
Difference in log files for negatives when using gene_db
#47 opened Sep 10, 2015 by kajcox
2
ProTip! no:milestone will show everything without a milestone.