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The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service components.

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kbaseattic/genome_annotation

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Dependencies

  • External Package

  • Ports that need to be open Port 7050

Setup using the kbase VMs

======= 0. Start the VM and clone the git repo. nova boot .... (options will change over time) ssh ubuntu@

  1. Following an updated version of the directions from: https://trac.kbase.us/projects/kbase/wiki/IntegrationTargets sudo bash cd /kb git clone kbase@git.kbase.us:/dev_container.git cd dev_container/modules git clone kbase@git.kbase.us:/genome_annotation.git cd .. ./bootstrap /kb/runtime . user-env.sh

  2. The make target deploy will install the service, libraries and documentation cd modules/genome_annotation make deploy

  3. Run the internal unit tests make test

  4. The service is started/stopped by using the start_service and stop_service scripts in /kb/deployment/services/genome_annotation. cd /kb/deployment/services/genome_annotation ./start_service # or ./stop_service

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The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service components.

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