Phylogenetic Tree and Multiple Sequence Alignment (MSA) Services

Overview

This service provides a set of methods for querying, manipulating, and analyzing multiple sequence alignments and phylogenetic trees. It also has functions to build alignments and trees.

Authors

Michael Sneddon, LBL (mwsneddon@lbl.gov) Fangfang Xia, ANL (fangfang.xia@gmail.com) Matt Henderson, LBL (mhenderson@lbl.gov) Roman Sutormin, LBL (rsutormin@lbl.gov)

Special deployment instructions

• The Tree service is currently only supported for server deployment in a linux environment. Only clients and scripts should be deployed on a Mac. (to deploy only clients/scripts, use make deploy-client; make deploy-scripts)
• follow the standard KBase deployment and testing procedures

Starting/Stopping the service, and other notes

• to start and stop the service, use the 'start_service' and 'stop_service' scripts in (the default location) /kb/deployment/services/trees