scDD: An R package to identify differentially distributed genes in scRNA-seq
The Bioconductor landing page is https://bioconductor.org/packages/scDD. To install, make sure you have the current version of Bioconductor, and use the following commands:
For examples and tips on using the package, please see the vignette PDF here which you can alternatively bring up by typing
after installing and loading the package into R.
Please cite the following publication if you use scDD in your work:
Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 2016 Oct 25;17(1):222. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1077-y
You can obtain this citation within R by typing