-
Notifications
You must be signed in to change notification settings - Fork 2
A command-line program for processing BAM format DNA sequence.
License
keithj/ReadMill
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
Introduction ReadMill is a command-line program for processing BAM format (http://samtools.sourceforge.net) short-read DNA sequence data, particularly unmapped reads. BAM format is being used as a compact alternative to Fastq format for storing unmapped reads. ReadMill comprises a set of established Fastq tools ported to operate on BAM data. The goal is to provide a simple command-line program that 1) performs reporting tasks such as making quality plots and counts 2) performs data manipiulation tasks such as filtering, partitioning, clipping and annotating reads prior to mapping Data manipulation will be read-group aware and will add suitable metadata to SAM headers to record what changes have been made.
About
A command-line program for processing BAM format DNA sequence.
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published