pixel-sequencing

Per-pixel sequencing method for in-situ base calling.

Usage

Configuration in get_config.m

Typical application of sequencing steps in init.m

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
ID_list_BCpanel.m		ID_list_BCpanel.m
Only_Classification_Slides.csv		Only_Classification_Slides.csv
README.md		README.md
apply_thresholds.m		apply_thresholds.m
centroids.m		centroids.m
convert_14_to_8bit.m		convert_14_to_8bit.m
cp_centroids.m		cp_centroids.m
cp_comparison.m		cp_comparison.m
crop_recursive.m		crop_recursive.m
cycles_list.m		cycles_list.m
filter_size.m		filter_size.m
filtered.m		filtered.m
generate_cp_loaddata_csv.py		generate_cp_loaddata_csv.py
get_config.m		get_config.m
get_prefix.m		get_prefix.m
graph_threshold.m		graph_threshold.m
icp.m		icp.m
init.m		init.m
insitu-presentation.pdf		insitu-presentation.pdf
insitu-report.pdf		insitu-report.pdf
linspecer.m		linspecer.m
mip.m		mip.m
mkdir_basename.m		mkdir_basename.m
only_classification.cp		only_classification.cp
pointdrift_points.m		pointdrift_points.m
presentation.m		presentation.m
read_cycle_mips.m		read_cycle_mips.m
read_mips.m		read_mips.m
read_position.m		read_position.m
register.m		register.m
register_cycles.m		register_cycles.m
reorganize.m		reorganize.m
roi.m		roi.m
sequence.m		sequence.m
show_exclude.m		show_exclude.m
show_registration.m		show_registration.m
show_thresholds.m		show_thresholds.m
test_all.m		test_all.m
tophat.m		tophat.m
types_list.m		types_list.m
write_config.m		write_config.m
write_image.m		write_image.m
wshed.m		wshed.m