Inferring-demography-from-IBS

A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)

Name		Name	Last commit message	Last commit date
Latest commit History 9 Commits
example_input_data		example_input_data
#demographic_function_builder.py#		#demographic_function_builder.py#
.gitignore		.gitignore
README.md		README.md
calc_ibs_backcoal_varmu.py		calc_ibs_backcoal_varmu.py
compatibilize_hapfiles.py		compatibilize_hapfiles.py
condense_sorted_lengths.py		condense_sorted_lengths.py
demographic_function_builder.py		demographic_function_builder.py
demographic_inputfile.py		demographic_inputfile.py
ibs_from_ms_output.py		ibs_from_ms_output.py
infer_between_adaptive_cumulative.py		infer_between_adaptive_cumulative.py
infer_between_cumulative.py		infer_between_cumulative.py
infer_between_cumulative_specify_start.py		infer_between_cumulative_specify_start.py
infer_from_inputfile.py		infer_from_inputfile.py
infer_onepop_adaptive_cumulative.py		infer_onepop_adaptive_cumulative.py
infer_onepop_cumulative.py		infer_onepop_cumulative.py
infer_onepop_cumulative_specify_start.py		infer_onepop_cumulative_specify_start.py
merge_gapfiles.py		merge_gapfiles.py
optimize_from_inputfile.py		optimize_from_inputfile.py
parse_between_pops_allpairs.py		parse_between_pops_allpairs.py
parse_between_pops_allpairs.py~		parse_between_pops_allpairs.py~
parse_between_pops_noreuse.py		parse_between_pops_noreuse.py
parse_between_pops_noreuse.py~		parse_between_pops_noreuse.py~
parse_tract_file.py		parse_tract_file.py
parse_within_pop_allpairs.py		parse_within_pop_allpairs.py
parse_within_pop_allpairs.py~		parse_within_pop_allpairs.py~
parse_within_pop_natphase.py		parse_within_pop_natphase.py
parse_within_pop_natphase.py~		parse_within_pop_natphase.py~
plot_between.py		plot_between.py
plot_from_inputfile.py		plot_from_inputfile.py
plot_ibs_tracts.py		plot_ibs_tracts.py
plot_ibs_tracts_customlabel.py		plot_ibs_tracts_customlabel.py
plot_onepop.py		plot_onepop.py
user_manual.aux		user_manual.aux
user_manual.log		user_manual.log
user_manual.pdf		user_manual.pdf
user_manual.synctex.gz		user_manual.synctex.gz
user_manual.tex		user_manual.tex
user_manual.toc		user_manual.toc

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