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atom-imagej-mode

Atom package for running ImageJ scripts in ImageJ/Fiji/ImageJ-server from Atom

Usage:

  1. Install the Fiji distribution of ImageJ.
  2. Enable the imagej-server update site in ImageJ.
  3. Install atom-imagej-mode into Atom
  4. Update the location of your ImageJ binary in the settings for atom-imagej-mode. e.g.:
  • OS X: /Applications/Fiji.app/Contents/MacOS/ImageJ-macosx
  • Linux: /home/username/Fiji.app/ImageJ-linux64
  • Windows: c:\Fiji.app\ImageJ-win64.exe