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Adding the option to impose positive values on fitted eclipse maps #559

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Adding the option to impose positive values on fitted eclipse maps #559

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Commits on Aug 7, 2023

  1. Test change to StarryModel identifying where to put positivity constr… 

    …aint
    Mark Hammond authored and Mark Hammond committed Aug 7, 2023
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Commits on Aug 9, 2023

  1. Added positive flux constraint via pixel sampling with Starry

    Mark Hammond authored and Mark Hammond committed Aug 9, 2023
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Commits on Aug 13, 2023

  1. Added meta flags for eclipse mapping

    @mark-hammond
    mark-hammond committed Aug 13, 2023
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  2. Added meta flags for eclipse mapping

    @mark-hammond
    mark-hammond committed Aug 13, 2023
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Commits on Aug 14, 2023

  1. Adding LogNormal distribution for positive map pixels

    @mark-hammond
    mark-hammond committed Aug 14, 2023
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  2. Adding comments and fixing magnitude in map plotter

    @mark-hammond
    mark-hammond committed Aug 14, 2023
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Commits on Aug 21, 2023

  1. Resolved conflict, now allows negative rp for pixel sampling

    @mark-hammond
    mark-hammond committed Aug 21, 2023
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  2. Fixed reference to starry ydeg to use correct value

    @mark-hammond
    mark-hammond committed Aug 21, 2023
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  3. Fixed conflicts with main branch

    @mark-hammond
    mark-hammond committed Aug 21, 2023
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  4. Fixed conflicts with main branch

    @mark-hammond
    mark-hammond committed Aug 21, 2023
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Commits on Aug 22, 2023

  1. Fixed conflicts with main branch

    @mark-hammond
    mark-hammond committed Aug 22, 2023
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Commits on Aug 24, 2023

  1. Merge remote-tracking branch 'origin/main' into positive_maps

    @taylorbell57
    taylorbell57 committed Aug 24, 2023
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  2. Keeping force_positivity name in meta 

    Doing this just to reduce the number of possible ECF settings and since
the general intention behind the force_positivity parameter is the same
between sinusoids and starry.
    @taylorbell57
    taylorbell57 committed Aug 24, 2023
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  3. Fixing plots_s5.py formatting for flake8

    @taylorbell57
    taylorbell57 committed Aug 24, 2023
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Commits on Aug 28, 2023

  1. Fixing old typo with emcee log

    @taylorbell57
    taylorbell57 committed Aug 28, 2023
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  2. Adding meta.exoplanet_first and saving trace 

    Adding meta.exoplanet_first (just like meta.lsq_first for emcee) to
generally allow running an optimizer before sampling.

Tweaking code to always save the PyMC3 trace (this will allow for
resuming the sampling later if needed).

Setting plotting verbosity to 1 for plot_eclipse_map figure and removing
the meta.record_map setting.
    @taylorbell57
    taylorbell57 committed Aug 28, 2023
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  3. Adjusting naming and display of eclipse map figure

    @taylorbell57
    taylorbell57 committed Aug 28, 2023
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  4. Fixing StarryModel.py flake8 formatting 

    Also finishing removal of meta.record_map (to always record map if
pixel_ydeg is in paramtitles)
    @taylorbell57
    taylorbell57 committed Aug 28, 2023
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Commits on Sep 5, 2023

  1. Always set oversample to 3 to ensure proper sampling

    @mark-hammond
    mark-hammond committed Sep 5, 2023
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  2. Calculate starry amp the same with or without pixel sampling

    @mark-hammond
    mark-hammond committed Sep 5, 2023
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  3. Change pixel priors to be exact factors of pi representing the expect… 

    …ed mean emission
    @mark-hammond
    mark-hammond committed Sep 5, 2023
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Commits on Sep 18, 2023

  1. Make pixel prior mean and sigma set by run params file

    @mark-hammond
    mark-hammond committed Sep 18, 2023
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  2. Change so that map trace is only saved if a map is fitted

    @mark-hammond
    mark-hammond committed Sep 18, 2023
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  3. Added option to output plotted lightcurve data with record_plot_data

    @mark-hammond
    mark-hammond committed Sep 18, 2023
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  4. Assume a fixed fp for fitting a pixel map

    @mark-hammond
    mark-hammond committed Sep 18, 2023
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Commits on Sep 21, 2023

  1. Add option to set pixel oversampling factor in run parameters

    @mark-hammond
    mark-hammond committed Sep 21, 2023
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  2. Add calculating and saving of binned model_phys

    @mark-hammond
    mark-hammond committed Sep 21, 2023
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Commits on Feb 10, 2024

  1. Merge remote-tracking branch 'origin/main' into positive_maps

    @taylorbell57
    taylorbell57 committed Feb 10, 2024
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  2. Tidying some S5 code and fixing flake8 issues

    @taylorbell57
    taylorbell57 committed Feb 10, 2024
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Commits on Feb 24, 2024

  1. Merge remote-tracking branch 'origin/main' into positive_maps

    @taylorbell57
    taylorbell57 committed Feb 24, 2024
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