Skeleton model (#56) #8
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] # windows-latest and disabled because pocl installation doesnt work | |
| python-version: [3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| submodules: recursive | |
| python-version: ${{ matrix.python-version }} | |
| # these libraries, along with pytest-xvfb (added in the `deps` in tox.ini), | |
| # enable testing on Qt on linux | |
| - name: Install Linux libraries | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \ | |
| libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \ | |
| libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 | |
| # strategy borrowed from vispy for installing opengl libs on windows | |
| - name: Install Windows OpenGL | |
| if: runner.os == 'Windows' | |
| run: | | |
| git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git | |
| powershell gl-ci-helpers/appveyor/install_opengl.ps1 | |
| # note: if you need dependencies from conda, considering using | |
| # setup-miniconda: https://github.com/conda-incubator/setup-miniconda | |
| # and | |
| # tox-conda: https://github.com/tox-dev/tox-conda | |
| - name: Set up conda ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| - name: Conda info | |
| shell: bash -l {0} | |
| run: conda info | |
| - name: Install pocl (linux) | |
| if: runner.os == 'Linux' || runner.os == 'macOS' | |
| shell: bash -l {0} | |
| run: conda install -y pocl | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python --version | |
| #conda install -y -c conda-forge -y | |
| conda install -y -c conda-forge pyopencl pip setuptools wheel pytest pytest-cov pytest-benchmark pytest-xvfb pandas pytest-qt "pyqt >=5.12.3,!=5.15.0" python-igraph pytables leidenalg pymeshfix numpy | |
| pip install -e . | |
| # this runs the platform-specific tests declared in tox.ini | |
| #- name: Install tox-conda | |
| # run: pip install tox-conda | |
| #- name: Test with tox | |
| # run: tox | |
| # env: | |
| # PLATFORM: ${{ matrix.platform }} | |
| - name: Test | |
| shell: bash -l {0} | |
| run: | | |
| # openCL tests need to be run before napari tests | |
| pytest -v ./src/morphometrics/label/_tests . --cov=./ --cov-report=xml | |
| - name: Coverage | |
| uses: codecov/codecov-action@v3 | |
| deploy: | |
| # this will run when you have tagged a commit, starting with "v*" | |
| # and requires that you have put your twine API key in your | |
| # github secrets (see readme for details) | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| if: contains(github.ref, 'tags') | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.x" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -U setuptools setuptools_scm wheel twine | |
| - name: Build and publish | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.TWINE_API_KEY }} | |
| run: | | |
| git tag | |
| python setup.py sdist bdist_wheel | |
| twine upload dist/* |