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[Meta] Memory and runtime performance improvements #272

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standage opened this issue Jun 18, 2018 · 1 comment
Open
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[Meta] Memory and runtime performance improvements #272

standage opened this issue Jun 18, 2018 · 1 comment

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@standage
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standage commented Jun 18, 2018

Here I want to keep track of some ideas we've thought of and, in some cases, discussed to improve kevlar's memory consumption and speed. I'll link to relevant issue threads and pull requests as they come about.

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standage commented Jul 18, 2018

It turns out that applying k-mer filtering mask at k-mer counting time (kevlar count) has all kinds of downstream efficiency benefits. See #277.

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