-
Notifications
You must be signed in to change notification settings - Fork 28
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Clarification on 'Warning: To many values of z. Using 2D polygons' #105
Comments
Hello, |
Thank you for your response. I had checked previously on this and the z values in my file are discrete, precisely they are all integers from 0 to 8. |
Hello, I recieve the following warning though:
I was wondering now about two things:
I also had a quick look at the logical check that is performed before raising the warning Best wishes & many thanks! |
Hi, |
Hello,
I'm running baysor v0.6.2 to get a 3D segmentation for CosMx data, where I provide as prior the cells identified by CosMx. I am getting the below warning and therefore I only get joint polygons.
Can you clarify what causes this?
Thank you
Info: Estimating boundary polygons
[22:40:52] Warning: To many values of z. Using 2D polygons
└ Baysor.Processing /home/viktor_petukhov/.julia/dev/Baysor/src/processing/data_processing/boundary_estimation.jl:143
The text was updated successfully, but these errors were encountered: