Skip to content
LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
PostScript TeX
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
book Minor updates before final release May 18, 2019
not-maintained Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
.gitignore Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
2018-08-18.bib Updates to notes through genetic structure Nov 25, 2018
ABO-inbreeding.eps Initial set of files Dec 23, 2014
GWAS-warfarin.eps Final set of edits for the semester Apr 22, 2017
HGDP-CEPH.eps Individual assignment notes Jan 2, 2015
Nilsson-Ehle.eps Minor updates to abc and population-genomics. 2017 revisions of quant… Apr 9, 2017
README.md Not maintained is pre-2019 Aug 31, 2019
Trait-scale-linear.eps Minor updates to abc and population-genomics. 2017 revisions of quant… Apr 9, 2017
UK-Europe.eps
UK-biobank.eps
_config.yml Set theme jekyll-theme-minimal Aug 5, 2017
amova-haplotypes.eps Initial set of files Dec 23, 2014
amova-procedure.eps Initial set of files Dec 23, 2014
amova-sample-locations.eps
amy-tcs.eps
ancestral-polymorphism.eps Initial set of files Dec 23, 2014
association-intro.tex
beta-distribution.eps
beta-globin.eps Initial set of files Dec 23, 2014
cane-toad-expansion.eps Initial set of files Dec 23, 2014
cane-toad-models.eps Initial set of files Dec 23, 2014
coalescent-figure.eps Initial set of files Dec 23, 2014
coalescent.eps
coalescent.tex Updated notes on the coalescent Dec 23, 2018
desmodium-structure.eps
divergence-hypotheses.eps Initial set of files Dec 23, 2014
drift-heterozygote-advantage.eps Added notes on genetic draft Feb 28, 2017
drift.tex Updates through introduction to genetic drift Dec 9, 2018
fine-structure-britain.eps Finally updating changes from 2015 Dec 30, 2016
fumagalli-Bombyx.eps Finally updating changes from 2015 Dec 30, 2016
fumagalli-Bombyx.psd Finally updating changes from 2015 Dec 30, 2016
fumagalli-PCA.eps Finally updating changes from 2015 Dec 30, 2016
gamma.eps Initial set of files Dec 23, 2014
genetic-draft.eps Added notes on genetic draft Feb 28, 2017
genetic-structure-assignment.tex Updates to notes through genetic structure Nov 25, 2018
genetic-structure.tex Updates to notes through genetic structure Nov 25, 2018
genetic-transmission.tex
genomic-prediction-locus-1 copy.eps Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction-locus-1.eps Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction-locus-1.png Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction-locus-17.eps Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction-locus-17.png
genomic-prediction-multiple.eps Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction-multiple.png Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
genomic-prediction.tex
genotypic-value.eps Initial set of files Dec 23, 2014
globin-gene-tree.eps Updates to selection and multigene family notes for molecular evolution Mar 11, 2017
globin-species-tree.eps Updates to selection and multigene family notes for molecular evolution Mar 11, 2017
hardy-weinberg.tex Updates to notes through genetic structure Nov 25, 2018
html.sty Initial set of files Dec 23, 2014
human-PCA.eps
inbreeding.tex Updates to notes through genetic structure Nov 25, 2018
james-assign.eps Initial set of files Dec 23, 2014
james.eps
knowles-s-values.eps ABC notes updated Apr 1, 2017
kreitman-hudson.eps Updates to selection and multigene family notes for molecular evolution Mar 11, 2017
lecture.sty
lubell-structure.eps
molevol-amova.tex All revisions done. Need to write genomic regression. Jan 19, 2019
molevol-intro.tex
molevol-patterns.tex All revisions done. Need to write genomic regression. Jan 19, 2019
molevol-selection.tex All revisions done. Need to write genomic regression. Jan 19, 2019
mutation-drift.tex Notes on mutation, migration, selection, and drift updated. Dec 16, 2018
mutation.eps
nielsen-wakeley.eps Updates for AMOVA and statistical phylogeography Mar 26, 2017
ohta-multigene.eps Updates to selection and multigene family notes for molecular evolution Mar 11, 2017
outlier-high.eps Initial set of files Dec 23, 2014
outlier.eps
popgen.bib Updated association mapping notes. New notes on genomic prediction. Apr 28, 2019
population-genomics.tex All revisions done. Need to write genomic regression. Jan 19, 2019
quant-evolution.tex All revisions done. Need to write genomic regression. Jan 19, 2019
quant-intro.tex All revisions done. Need to write genomic regression. Jan 19, 2019
quant-resemblance.tex All revisions done. Need to write genomic regression. Jan 19, 2019
rdna.eps Initial set of files Dec 23, 2014
sample-assign.eps Initial set of files Dec 23, 2014
selection-drift.tex Notes on mutation, migration, selection, and drift updated. Dec 16, 2018
selection-estimate.tex Updates through introduction to genetic drift Dec 9, 2018
selection.tex
sky-islands.eps Initial set of files Dec 23, 2014
statistical-phylogeography.tex
wbar.eps
wyeomyia-COI.ai Initial set of files Dec 23, 2014
wyeomyia-COI.eps Initial set of files Dec 23, 2014
wyeomyia-COI.psd
wyeomyia-RAD.ai Initial set of files Dec 23, 2014
wyeomyia-RAD.eps
wyeomyia-RAD.psd Initial set of files Dec 23, 2014

README.md

Lecture-Notes-in-Population-Genetics

The files here provide the LaTeX and other files I use for producing the lecture notes I use in EEB 5348 at the University of Connecticut: http://darwin.eeb.uconn.edu/uncommon-ground/eeb348/notes/. The LaTeX source files are licenced under a Creative Commons Attribution-ShareAlike license http://creativecommons.org/licenses/by-sa/4.0/. Some of the graphical artwork will also be available under the same license (when I have time to compile a list of all files included in the CC license). Some of the artwork is converted from published sources, and you will find citations to those sources in the notes where the artwork is used.

Files in the book subdirectory are either direct copies of those in the base directory or simple conversions to allow me to produce a single volume of notes: https://figshare.com/articles/Lecture_notes_in_population_genetics/100687. If you use or refer to these notes, please use the DOI from Figshare to cite them.

Files in the not maintained subdirectory are from pre-2019 editions of the course. I believe all of the EPS files referred to in the LaTeX source are also found in this directory, but it's possible that I've missed some. As the title of the subdirectory suggests, I'm not maintaining these notes any more. They were useful and accurate the last time I used them (so far as I know), but I make no promises for them now.

You can’t perform that action at this time.