Skip to content

khristinalukanets/Gravity-SDOH-Exchange-RI

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Gravity SDOH Exchange RI

Reference Implementation for the Gravity use cases specified at https://confluence.hl7.org/display/FHIR/2021-01+Gravity+SDOH+Clinical+Care+Track. Current supported IG version is 1.1.0 (STU 2 ballot): http://hl7.org/fhir/us/sdoh-clinicalcare/2022Jan/

Live Example

All reference implementations are usually available for testing during connectathons. There is a high chance at any other time that the apps have been undeployed to reduce costs. If so - try to deploy them locally.

Prototypes

Interaction prototype between Provider and Patient:

Provider/ Complete questionnaire regarding social risks https://invis.io/2J10RH2AKAR3#/462516921_Complete_Questionnaire_Regarding_Social_Risks-_1

Patient/ Complete questionnaire regarding social risks

https://invis.io/87115OS1XTCG#/462518145_Complete_Questionnaire_Regarding_Social_Risks-_14

Provider/ Collect information for a service

https://invis.io/2J10RH2AKAR3#/462518690_Collect_Information_For_A_Service-_1

Patient/ Collect information for a service

https://invis.io/87115OS1XTCG#/462519058_Collect_Information_For_A_Service-_16

Provider/ Information regarding service

https://invis.io/2J10RH2AKAR3#/462519533_Information_Regarding_Service-_1

Patient/ Information regarding service

https://invis.io/87115OS1XTCG#/462519895_Information_Regarding_Service-_13

Provider/ Schedule appointment for service requested created and sent to the performer

https://invis.io/2J10RH2AKAR3#/462586427_Schedule_Appointment_For_Service_Requested_Created_And_Sent_To_The_Performer-_1

Patient/ Schedule appointment for service requested created and sent to the performer

https://invis.io/87115OS1XTCG#/462586725_Schedule_Appointment_For_Service_Requested_Created_And_Sent_To_The_Performer-_18

Provider/ Provide patient with service performer contact information

https://invis.io/2J10RH2AKAR3#/462520020_Provide_Patient_With_Service_Performer_Contact_Information-_1

Patient/ Provide patient with service performer contact information

https://invis.io/87115OS1XTCG#/462520439_Provide_Patient_With_Service_Performer_Contact_Information-_18

Provider/ Provide feedback on service delivered

https://invis.io/2J10RH2AKAR3#/462587973_Provide_Feedback_On_Service_Delivered-_1

Patient/ Provide feedback on service delivered

https://invis.io/87115OS1XTCG#/462604660_Provide_Feedback_On_Service_Delivered_1## Local Testing

Configure

To configure the EHR and CP apps to use custom Sandbox URLs - set the following system variables: Replace {APP} with either ehr or cp.

Variable Description
{APP}.fhir-server-uri Secured URI of the underlying FHIR server. Used for an authorized access for a specific user data (Patient or Practitioner).
{APP}.open-fhir-server-uri Open URI of the underlying FHIR server. Used by the system to perform scheduled read/write operations in the background outside of a user context. Usually a 'Client Credentials' flow is used, but it is not supported by the Logica Sandbox.
spring.security.oauth2.client.registration.{APP}-client.client-id OAauth2 Client ID.
spring.security.oauth2.client.registration.{APP}-client.client-secret OAauth2 Client Secret. Leave empty for public clients.
spring.security.oauth2.client.provider.{APP}-provider.token-uri OAuth2 Token endpoint. Defaults to the Logica Token ednpoint.
spring.security.oauth2.client.provider.{APP}-provider.authorization-uri OAuth2 Authorization endpoint. Defaults to the Logica Authorization ednpoint.
spring.security.oauth2.client.provider.{APP}-provider.user-info-uri OAuth2 UserInfo endpoint. Defaults to the Logica UserInfo ednpoint.
spring.security.oauth2.client.provider.{APP}-provider.jwk-set-uri JSON Web Key Set endpoint. Defaults to the Logica JWKS ednpoint.

In CBO app the source FHIR Servers are added dynamically through UI, so no any configuration is needed on start.

Build

Latest Java and Maven have to be installed. Just run a command from a base directory:

mvn clean install

Run

java -Dserver.port=8080 -jar ehr/app/target/app-1.0-SNAPSHOT.jar
java -Dserver.port=8082 -jar cp/app/target/app-1.0-SNAPSHOT.jar
#The -Dapp.url parameter value should match the identifier of the CBO organization resource stored at CP FHIR server.
java -Dserver.port=8084 -Dapp.url=http://localhost:8084 -jar cbo/app/target/app-1.0-SNAPSHOT.jar

Change port 8080 to any other port you want an application to listen to. Specify varaibles before the -jar flag in format -Dvariable=value. EHR run command example:

java -Dserver.port=8080 -Dehr.fhir-server-uri=https://api.logicahealth.org/GravitySandboxNew/data -Dehr.open-fhir-server-uri=https://api.logicahealth.org/GravitySandboxNew/open -Dspring.security.oauth2.client.registration.ehr-client.client-id=1c4d149f-9995-4c5c-ac42-018150437355 -Dspring.security.oauth2.client.registration.ehr-client.client-secret=secret -jar ehr/app/target/app-1.0-SNAPSHOT.jar

Prepare a Sandbox

Delete data from the previous runs

This section is applicable for both EHR and CP apps. Run the following command to delete all data for a specific Resource type belonging to your test Patient resource:

DELETE https://{server base}/Task?patient={patient id}&_profile:contains={SDOH Profile or no string to match all}&_cascade=delete

All SDOH profiles can be found in the official SDOH IG documetnation at http://build.fhir.org/ig/HL7/fhir-sdoh-clinicalcare

Recource types to delete:

  • Task (this includes both Referrals and Patient Tasks)
  • ServiceRequest
  • Procedure
  • Consent
  • Condition
  • Goal
  • QuestionnaireResponse

Optional (if these resources have been updated in the IG artifacts page):

  • Hunger Vital Sign Questionnaire
  • Hunger Vital Sign StructureMap

Initialize EHR Sandbox

Create an EHR Organization resource with the PractitionerRole

Send a POST request to https://{EHR server base}/ with the following content. This will create an EHR Organization entry and link it to the performing Practitioner using the PractitionerRole resource. This practitioner with corresponding PractitionerRole resource and Organization referencing the current EHR, should be launching the EHR app, in other case the launch will fail. Please take into account that both resources should belong to the US-Core profile.

{
    "resourceType": "Bundle",
    "id": "bundle-transaction",
    "type": "transaction",
    "entry": [
        {
            "fullUrl": "urn:uuid:61ebe359-bfdc-4613-8bf2-c5e300945f0a",
            "resource": {
                "resourceType": "Organization",
                "meta": {
                    "profile": [
                        "http://hl7.org/fhir/us/core/StructureDefinition/us-core-organization"
                    ]
                },
                "active": true,
                "name": "Good EHR"
            },
            "request": {
                "method": "POST",
                "url": "Organization"
            }
        },
        {
            "fullUrl": "urn:uuid:05efabf0-4be2-4561-91ce-51548425acb9",
            "resource": {
                "resourceType": "PractitionerRole",
                "id": "14604",
                "meta": {
                    "profile": [
                        "http://hl7.org/fhir/us/core/StructureDefinition/us-core-practitionerrole"
                    ]
                },
                "active": true,
                "practitioner": {
                    "reference": "Practitioner/smart-Practitioner-71482713",
                    "type": "Practitioner",
                    "display": "Susan Clark"
                },
                "organization": {
                    "reference": "urn:uuid:61ebe359-bfdc-4613-8bf2-c5e300945f0a",
                    "display": "Good EHR"
                },
                "code": [
                    {
                        "coding": [
                            {
                                "system": "http://terminology.hl7.org/CodeSystem/practitioner-role",
                                "code": "doctor"
                            }
                        ]
                    }
                ],
                "specialty": [
                    {
                        "coding": [
                            {
                                "system": "http://snomed.info/sct",
                                "code": "408443003",
                                "display": "General medical practice"
                            }
                        ]
                    }
                ],
                "availableTime": [
                    {
                        "daysOfWeek": [
                            "mon",
                            "tue",
                            "wed"
                        ],
                        "availableStartTime": "09:00:00",
                        "availableEndTime": "16:30:00"
                    },
                    {
                        "daysOfWeek": [
                            "thu",
                            "fri"
                        ],
                        "availableStartTime": "09:00:00",
                        "availableEndTime": "12:00:00"
                    }
                ],
                "notAvailable": [
                    {
                        "description": "Susan will be on extended leave during May 2021",
                        "during": {
                            "start": "2021-05-01",
                            "end": "2021-05-20"
                        }
                    }
                ],
                "availabilityExceptions": "Susan is generally unavailable on public holidays and during the Christmas/New Year break"
            },
            "request": {
                "method": "POST",
                "url": "PractitionerRole"
            }
        }
    ]
}

Create CP Organization resources with Endpoints

Send a POST request to https://{EHR server base}/ with the following content. This will create a CP Organization entry with a corresponding Endpoint. Please take into account that currently only OPEN FHIR endpoints are supported.

{
    "resourceType": "Bundle",
    "id": "bundle-transaction",
    "type": "transaction",
    "entry": [
        {
            "fullUrl": "urn:uuid:61ebe359-bfdc-4613-8bf2-c5e300945f0a",
            "resource": {
                "resourceType": "Organization",
                "type": [
                    {
                        "coding": [
                            {
                                "system": "http://hl7.org/gravity/CodeSystem/sdohcc-temporary-organization-type-codes",
                                "code": "cp",
                                "display": "Coordination Platform"
                            }
                        ]
                    }
                ],
                "name": "Good Health Clinic",
                "endpoint": [
                    {
                        "reference": "urn:uuid:05efabf0-4be2-4561-91ce-51548425acb9"
                    }
                ]
            },
            "request": {
                "method": "POST",
                "url": "Organization"
            }
        },
        {
            "fullUrl": "urn:uuid:05efabf0-4be2-4561-91ce-51548425acb9",
            "resource": {
                "resourceType": "Endpoint",
                "status": "active",
                "connectionType": {
                    "system": "http://terminology.hl7.org/CodeSystem/endpoint-connection-type",
                    "code": "hl7-fhir-rest"
                },
                "name": "Health Intersections CarePlan Hub",
                "managingOrganization": {
                    "reference": "urn:uuid:61ebe359-bfdc-4613-8bf2-c5e300945f0a"
                },
                "contact": [
                    {
                        "system": "email",
                        "value": "endpointmanager@example.org",
                        "use": "work"
                    }
                ],
                "period": {
                    "start": "2014-09-01"
                },
                "address": "https://api.logicahealth.org/GravitySDOHCBRO/open"
            },
            "request": {
                "method": "POST",
                "url": "Endpoint"
            }
        }
    ]
}

Create Health Concerns

Health Concern Observation resources are expected to be generated by the Hunger Vital Sign StructureMap from a QuestionnaireResponse resource. This step is automated and available as a REASTful API call:

curl --location --request POST 'https://sdoh-exchange-ri-ehr.herokuapp.com/administration/$extract' \
--header 'Content-Type: application/json' \
--data-raw '{QuestionnaireResponse resource}'

All examples can be found at http://build.fhir.org/ig/HL7/fhir-sdoh-clinicalcare/artifacts.html#examples. A Health Concern should refererence a QuestionnaireResponse resource it is derived from. And a QuestionnaireResponse resource will contain a reference to Group Observation resource tree (find examples in the IG Artifacts page).

Initialize CP Sandbox

Create a CP Organization resource with the PractitionerRole

Instuctions are the same as for the EHR. Just put the proper CP organization name, and set type to:

"type": [
    {
        "coding": [
            {
                "code": "cp",
                "display": "Community Platform",
                "system": "http://hl7.org/gravity/CodeSystem/sdohcc-temporary-organization-type-codes"
            }
        ]
    }
]

Create CBO Organization resources with Endpoints

Send a POST request to https://{CP server base}/Organization with the following content. This will create a CBO Organization entry with a corresponding name and identifier.

⚠️ The identifier should match the -Dapp.url parameter specified at the CBO application start.

{
    "id": "16180",
    "identifier": [
        {
            "system": "urn:ietf:rfc:3986",
            "value": "https://sdoh-exchange-ri-cbo.herokuapp.com"
        }
    ],
    "meta": {
        "lastUpdated": "2021-12-02T13:45:18.000+00:00",
        "profile": [
            "http://hl7.org/fhir/us/core/StructureDefinition/us-core-organization"
        ],
        "source": "#mmPINEJ9JJ0CRPPV",
        "versionId": "1"
    },
    "name": "Social Alliance",
    "resourceType": "Organization",
    "type": [
        {
            "coding": [
                {
                    "code": "cbo",
                    "display": "Community Based Organization",
                    "system": "http://hl7.org/gravity/CodeSystem/sdohcc-temporary-organization-type-codes"
                }
            ]
        }
    ]
}

TODOs

  1. Update handling of Race/Ethnicity according to STU2
  2. Review latest changes in STU2 and synchronize them with code
  3. Task.restriction.period should be used instead of Task.execution
  4. Support other types of Patient tasks
  5. Support (or just verify) EHR-to-CBO exchange

About

Reference implementation for the Gravity SDOH IG

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Java 51.8%
  • Vue 26.4%
  • HTML 14.7%
  • TypeScript 4.3%
  • SCSS 2.0%
  • JavaScript 0.7%
  • Procfile 0.1%