remove banner; fix typo; update roxygen

kingaa · Jan 23, 2024 · 08eb233 · 08eb233
1 parent 37318fd
commit 08eb233
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: pomp
 Type: Package
 Title: Statistical Inference for Partially Observed Markov Processes
-Version: 5.5.1.1
-Date: 2024-01-11
+Version: 5.5.2.0
+Date: 2024-01-22
 Authors@R: c(person(given=c("Aaron","A."),family="King",role=c("aut","cre"),email="kingaa@umich.edu",comment=c(ORCID="0000-0001-6159-3207")),
 	  person(given=c("Edward","L."),family="Ionides",role="aut",comment=c(ORCID="0000-0002-4190-0174"))	,
 	  person(given="Carles",family="Bretó",role="aut",comment=c(ORCID="0000-0003-4695-4902")),
@@ -29,7 +29,7 @@ LazyData: true
 BugReports: https://github.com/kingaa/pomp/issues/
 Encoding: UTF-8
 Roxygen: list(roclets = c("collate", "namespace", "rd"))
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1
 Collate: 
     'package.R'
     'pstop.R'

diff --git a/R/logmeanexp.R b/R/logmeanexp.R
@@ -1,7 +1,7 @@
 ##' The log-mean-exp trick
 ##'
-##' \code{logmeanexp} computes \deqn{\log\frac{1}{N}\sum_{n=1}^N\!e^x_i,}{log
-##' mean exp(x_i),} avoiding over- and under-flow in doing so.  It can
+##' \code{logmeanexp} computes \deqn{\log\frac{1}{n}\sum_{i=1}^n\!e^{x_i},}{log
+##' mean exp(x),} avoiding over- and under-flow in doing so.  It can
 ##' optionally return an estimate of the standard error in this quantity.
 ##'
 ##' When \code{se = TRUE}, \code{logmeanexp} uses a jackknife estimate of the

diff --git a/R/package.R b/R/package.R
@@ -9,8 +9,7 @@
 ##' inference methods for \acronym{POMP} models can be implemented.
 ##'
 ##' @name pomp-package
-##' @aliases pomp,package
-##' @docType package
+##' @aliases pomp,package pomp-package
 ##' @author Aaron A. King
 ##' @family implementation information
 ##' @family pomp workhorses
@@ -92,20 +91,15 @@
 ##'
 ##' @useDynLib pomp, .registration = TRUE, .fixes="P_"
 ##' @import methods
-NULL
+"_PACKAGE"
 
-.onAttach <- function (...) {
-  .banner()
-}
+## .onAttach <- function (...) {
+##   .banner()
+## }
 
-.banner <- function (...) {
-  msg <- r"{
-Welcome to pomp!
-
-As of version 4.6, no user-visible pomp function has a name that
-includes a dot ('.'). Function names have been changed to replace the dot
-with an underscore ('_'). For more information, see the pomp blog:
-https://kingaa.github.io/pomp/blog.html.
-}"
-  packageStartupMessage("\n",paste(strwrap(msg),collapse="\n"),"\n")
-}
+## .banner <- function (...) {
+##   msg <- r"{
+## Welcome to pomp!
+## }"
+##  packageStartupMessage("\n",paste(strwrap(msg),collapse="\n"),"\n")
+## }
diff --git a/man/abc.Rd b/man/abc.Rd
diff --git a/man/basic_probes.Rd b/man/basic_probes.Rd
diff --git a/man/coef.Rd b/man/coef.Rd
diff --git a/man/cond_logLik.Rd b/man/cond_logLik.Rd
diff --git a/man/covmat.Rd b/man/covmat.Rd
diff --git a/man/eff_sample_size.Rd b/man/eff_sample_size.Rd
diff --git a/man/filter_mean.Rd b/man/filter_mean.Rd
diff --git a/man/filter_traj.Rd b/man/filter_traj.Rd
diff --git a/man/flow.Rd b/man/flow.Rd
diff --git a/man/forecast.Rd b/man/forecast.Rd
diff --git a/man/loglik.Rd b/man/loglik.Rd
diff --git a/man/logmeanexp.Rd b/man/logmeanexp.Rd
diff --git a/man/nlf.Rd b/man/nlf.Rd
diff --git a/man/obs.Rd b/man/obs.Rd
diff --git a/man/parameter_trans.Rd b/man/parameter_trans.Rd
diff --git a/man/pomp-package.Rd b/man/pomp-package.Rd
diff --git a/man/pomp_fun.Rd b/man/pomp_fun.Rd
diff --git a/man/pred_mean.Rd b/man/pred_mean.Rd
diff --git a/man/pred_var.Rd b/man/pred_var.Rd
diff --git a/man/probe.Rd b/man/probe.Rd
diff --git a/man/probe_match.Rd b/man/probe_match.Rd
diff --git a/man/saved_states.Rd b/man/saved_states.Rd
diff --git a/man/spect.Rd b/man/spect.Rd
diff --git a/man/spect_match.Rd b/man/spect_match.Rd
diff --git a/man/spy.Rd b/man/spy.Rd
diff --git a/man/states.Rd b/man/states.Rd
diff --git a/man/summary.Rd b/man/summary.Rd
diff --git a/man/traces.Rd b/man/traces.Rd
diff --git a/man/traj_match.Rd b/man/traj_match.Rd
diff --git a/man/trajectory.Rd b/man/trajectory.Rd