GitHub - kipdlacy/UnselfishMeioticDrive

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Name		Name	Last commit message	Last commit date
Latest commit History 72 Commits
AlignmentAndVariantCallingWGS		AlignmentAndVariantCallingWGS
BinomialModeling		BinomialModeling
BinomialTestAndLowBinomialProportion95CI		BinomialTestAndLowBinomialProportion95CI
DevelopmentalMortalityStats		DevelopmentalMortalityStats
LinkedReadGenomes_CrossoverAndLOHDetection		LinkedReadGenomes_CrossoverAndLOHDetection
LossOfHeterozygosity_KnownPedigreePairs		LossOfHeterozygosity_KnownPedigreePairs
ShortReadGenomes_CrossoverAndLOHDetection		ShortReadGenomes_CrossoverAndLOHDetection
TransgenicLineCharacterization		TransgenicLineCharacterization
UsefulFiles		UsefulFiles
.gitignore		.gitignore
readme.txt		readme.txt

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This repository contains the code used to perform all analyses in the manuscript "Unselfish meiotic drive maintains heterozygosity in a parthenogenetic ant" by Kip D. Lacy, Taylor Hart, and Daniel J.C. Kronauer.
This code requires used bash commands and requires R, python, GATK 4.2, vcftools