This Repository accompanies, Kibet CK and Machanick P. Transcription factor motif quality assessment requires systematic comparative analysis [version 1; referees: 2 approved with reservations]. F1000Research 2015, 4(ISCB Comm J):1429 (doi: 10.12688/f1000research.7408.1)
It contains Data, code and an Ipython notebook for reproducibility of the research carried out.
Structure of the repository is as follows:
This contains raw and processed data. For PBM and ChIP-seq data.
Results generated using scripts in the code folder
Folder stores modules used. It also contains an Ipython notebook that provides a walkthrough the execution of the codes and further procersing of the data for visualization. It also contains a requirements file that state the python modules required for proper use of the python code provided.
Separate notebooks are provided for PBM and ChIP-seq data processing
