This repository hosts predictive models for genomics and serves as a model source for Kipoi. Each folder containing
model.yaml is considered to be a single model.
- Install kipoi:
pip install kipoi
kipoi ls. This will checkout the
Follow the instructions on contributing/Getting started.
Using models (to predict, score variants, build new models)
To explore available models, visit http://kipoi.org/models. See kipoi/README.md and docs/using getting started for more information on how to programatically access the models from this repository using CLI, python or R.
Configuring local storage location
This model source (https://github.com/kipoi/models) is included in the Kipoi config file (
~/.kipoi/config.yaml) by default:
# ~/.kipoi/config.yaml model_sources: kipoi: type: git-lfs remote_url: firstname.lastname@example.org:kipoi/models.git local_path: ~/.kipoi/models/ auto_update: True
If you wish to keep the models stored elsewhere, edit the