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Benchmarking splice variant prediction algorithms using massively parallel splicing assays

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kitzmanlab/splicebench2023

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Download and unzip data from Zenodo 10.5281/zenodo.8351879

Get and setup hg19 reference

wget https://hgdownload.cse.ucsc.edu/goldenpath/hg19/bigZips/hg19.fa.gz 
gunzip hg19.fa.gz 
bgzip hg19.fa
samtools faidx hg19.fa.gz

Install splfxseq package

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Benchmarking splice variant prediction algorithms using massively parallel splicing assays

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