Moved more stuff and updated unit tests to point to test data.

kiyo-masui · Aug 9, 2011 · f9d095a · f9d095a
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Showing 239 changed files with 11,228 additions and 16 deletions.
diff --git a/python_km/README → README b/python_km/README → README
diff --git a/python_km/__init__.py → __init__.py b/python_km/__init__.py → __init__.py
diff --git a/python_km/cal/__init__.py → cal/__init__.py b/python_km/cal/__init__.py → cal/__init__.py
diff --git a/python_km/cal/convert_tables_fits.py → cal/convert_tables_fits.py b/python_km/cal/convert_tables_fits.py → cal/convert_tables_fits.py
diff --git a/python_km/cal/mueller_from_params.py → cal/mueller_from_params.py b/python_km/cal/mueller_from_params.py → cal/mueller_from_params.py
diff --git a/python_km/cal/mueller_gen.py → cal/mueller_gen.py b/python_km/cal/mueller_gen.py → cal/mueller_gen.py
diff --git a/python_km/cal/mueller_gen_mod.py → cal/mueller_gen_mod.py b/python_km/cal/mueller_gen_mod.py → cal/mueller_gen_mod.py
diff --git a/python_km/cal/name.py → cal/name.py b/python_km/cal/name.py → cal/name.py
diff --git a/python_km/cal/total_cal_gen.py → cal/total_cal_gen.py b/python_km/cal/total_cal_gen.py → cal/total_cal_gen.py
diff --git a/python_km/core/__init__.py → core/__init__.py b/python_km/core/__init__.py → core/__init__.py
diff --git a/python_km/core/algebra.py → core/algebra.py b/python_km/core/algebra.py → core/algebra.py
diff --git a/python_km/core/base_data.py → core/base_data.py b/python_km/core/base_data.py → core/base_data.py
diff --git a/python_km/core/base_fits.py → core/base_fits.py b/python_km/core/base_fits.py → core/base_fits.py
diff --git a/python_km/core/data_block.py → core/data_block.py b/python_km/core/data_block.py → core/data_block.py
diff --git a/python_km/core/data_map.py → core/data_map.py b/python_km/core/data_map.py → core/data_map.py
diff --git a/python_km/core/dir_data.py → core/dir_data.py b/python_km/core/dir_data.py → core/dir_data.py
diff --git a/python_km/core/fitsGBT.py → core/fitsGBT.py b/python_km/core/fitsGBT.py → core/fitsGBT.py
diff --git a/python_km/core/fits_map.py → core/fits_map.py b/python_km/core/fits_map.py → core/fits_map.py
diff --git a/python_km/core/handythread.py → core/handythread.py b/python_km/core/handythread.py → core/handythread.py
diff --git a/python_km/core/hist.py → core/hist.py b/python_km/core/hist.py → core/hist.py
diff --git a/python_km/core/test_algebra.py → core/test_algebra.py b/python_km/core/test_algebra.py → core/test_algebra.py
diff --git a/python_km/core/test_data_block.py → core/test_data_block.py b/python_km/core/test_data_block.py → core/test_data_block.py
@@ -15,7 +15,7 @@
 nfreq = 10
 dims = (ntimes, npol, ncal, nfreq)
 
-test_fits_file_name = 'testfile_GBTfits.fits'
+test_fits_file_name = 'testdata/testfile_GBTfits.fits'
 
 def standard_data_test(utest_case) :
     """Encapsulates a few tests on TestDB.data.

diff --git a/python_km/core/test_fitsGBT.py → core/test_fitsGBT.py b/python_km/core/test_fitsGBT.py → core/test_fitsGBT.py
@@ -17,7 +17,7 @@
 import kiyopy.custom_exceptions as ce
 
 # This fits file generated by the script make_test_GBT_fits_file.py
-fits_test_file_name = 'testfile_GBTfits.fits'
+fits_test_file_name = 'testdata/testfile_GBTfits.fits'
 # This file has known properties:
 IF_set = (695, 725)
 scan_set = (17, 18)

diff --git a/python_km/core/test_fits_map.py → core/test_fits_map.py b/python_km/core/test_fits_map.py → core/test_fits_map.py
diff --git a/python_km/core/test_handythread.py → core/test_handythread.py b/python_km/core/test_handythread.py → core/test_handythread.py
diff --git a/python_km/core/test_hist.py → core/test_hist.py b/python_km/core/test_hist.py → core/test_hist.py
diff --git a/python_km/core/test_utils.py → core/test_utils.py b/python_km/core/test_utils.py → core/test_utils.py
diff --git a/python_km/core/utils.py → core/utils.py b/python_km/core/utils.py → core/utils.py
diff --git a/python_km/correlate/README → correlate/README b/python_km/correlate/README → correlate/README
diff --git a/python_km/correlate/__init__.py → correlate/__init__.py b/python_km/correlate/__init__.py → correlate/__init__.py
diff --git a/python_km/correlate/correlation_plots.py → correlate/correlation_plots.py b/python_km/correlate/correlation_plots.py → correlate/correlation_plots.py
diff --git a/python_km/correlate/freq_slices.py → correlate/freq_slices.py b/python_km/correlate/freq_slices.py → correlate/freq_slices.py
diff --git a/python_km/correlate/radio_corr.py → correlate/radio_corr.py b/python_km/correlate/radio_corr.py → correlate/radio_corr.py
diff --git a/python_km/correlate/test_freq_slices.py → correlate/test_freq_slices.py b/python_km/correlate/test_freq_slices.py → correlate/test_freq_slices.py
diff --git a/python_km/correlate/wigglez_corr.py → correlate/wigglez_corr.py b/python_km/correlate/wigglez_corr.py → correlate/wigglez_corr.py
diff --git a/python_km/correlate/wigglez_xcorr.py → correlate/wigglez_xcorr.py b/python_km/correlate/wigglez_xcorr.py → correlate/wigglez_xcorr.py
diff --git a/python_km/foreground/README → foreground/README b/python_km/foreground/README → foreground/README
diff --git a/python_km/foreground/__init__.py → foreground/__init__.py b/python_km/foreground/__init__.py → foreground/__init__.py
diff --git a/python_km/input/ers/added_sim_xcorr.template → input/ers/added_sim_xcorr.template b/python_km/input/ers/added_sim_xcorr.template → input/ers/added_sim_xcorr.template
diff --git a/...ut/ers/added_sim_xcorr_noconvopt.template → input/ers/added_sim_xcorr_noconvopt.template b/...ut/ers/added_sim_xcorr_noconvopt.template → input/ers/added_sim_xcorr_noconvopt.template
diff --git a/...ut/ers/added_sim_xcorr_noconvopt_rand.pbs → input/ers/added_sim_xcorr_noconvopt_rand.pbs b/...ut/ers/added_sim_xcorr_noconvopt_rand.pbs → input/ers/added_sim_xcorr_noconvopt_rand.pbs
diff --git a/...input/ers/added_sim_xcorr_nomean.template → input/ers/added_sim_xcorr_nomean.template b/...input/ers/added_sim_xcorr_nomean.template → input/ers/added_sim_xcorr_nomean.template
diff --git a/...input/ers/added_sim_xcorr_nomean_rand.pbs → input/ers/added_sim_xcorr_nomean_rand.pbs b/...input/ers/added_sim_xcorr_nomean_rand.pbs → input/ers/added_sim_xcorr_nomean_rand.pbs
diff --git a/...km/input/ers/added_sim_xcorr_pbs.template → input/ers/added_sim_xcorr_pbs.template b/...km/input/ers/added_sim_xcorr_pbs.template → input/ers/added_sim_xcorr_pbs.template
diff --git a/python_km/input/ers/added_sim_xcorr_rand.pbs → input/ers/added_sim_xcorr_rand.pbs b/python_km/input/ers/added_sim_xcorr_rand.pbs → input/ers/added_sim_xcorr_rand.pbs
diff --git a/python_km/input/ers/correlate_slices.ini → input/ers/correlate_slices.ini b/python_km/input/ers/correlate_slices.ini → input/ers/correlate_slices.ini
diff --git a/...on_km/input/ers/correlate_slices.template → input/ers/correlate_slices.template b/...on_km/input/ers/correlate_slices.template → input/ers/correlate_slices.template
diff --git a/.../input/ers/correlate_slices_firstpass.ini → input/ers/correlate_slices_firstpass.ini b/.../input/ers/correlate_slices_firstpass.ini → input/ers/correlate_slices_firstpass.ini
diff --git a/...m/input/ers/correlate_slices_modetest.ini → input/ers/correlate_slices_modetest.ini b/...m/input/ers/correlate_slices_modetest.ini → input/ers/correlate_slices_modetest.ini
diff --git a/...m/input/ers/correlate_slices_pbs.template → input/ers/correlate_slices_pbs.template b/...m/input/ers/correlate_slices_pbs.template → input/ers/correlate_slices_pbs.template
diff --git a/.../ers/correlate_slices_signalloss.template → .../ers/correlate_slices_signalloss.template b/.../ers/correlate_slices_signalloss.template → .../ers/correlate_slices_signalloss.template
diff --git a/.../correlate_slices_signalloss_pbs.template → .../correlate_slices_signalloss_pbs.template b/.../correlate_slices_signalloss_pbs.template → .../correlate_slices_signalloss_pbs.template
diff --git a/python_km/input/ers/radio_auto_correlate.ini → input/ers/radio_auto_correlate.ini b/python_km/input/ers/radio_auto_correlate.ini → input/ers/radio_auto_correlate.ini
diff --git a/python_km/input/ers/sim_auto_correlate.ini → input/ers/sim_auto_correlate.ini b/python_km/input/ers/sim_auto_correlate.ini → input/ers/sim_auto_correlate.ini
diff --git a/..._km/input/ers/sim_auto_correlate.template → input/ers/sim_auto_correlate.template b/..._km/input/ers/sim_auto_correlate.template → input/ers/sim_auto_correlate.template
diff --git a/...input/ers/sim_auto_correlate_pbs.template → input/ers/sim_auto_correlate_pbs.template b/...input/ers/sim_auto_correlate_pbs.template → input/ers/sim_auto_correlate_pbs.template
diff --git a/...km/input/ers/sim_xloss_correlate.template → input/ers/sim_xloss_correlate.template b/...km/input/ers/sim_xloss_correlate.template → input/ers/sim_xloss_correlate.template
diff --git a/...nput/ers/sim_xloss_correlate_pbs.template → input/ers/sim_xloss_correlate_pbs.template b/...nput/ers/sim_xloss_correlate_pbs.template → input/ers/sim_xloss_correlate_pbs.template
diff --git a/...km/input/ers/submit_added_sim_xcorr_batch → input/ers/submit_added_sim_xcorr_batch b/...km/input/ers/submit_added_sim_xcorr_batch → input/ers/submit_added_sim_xcorr_batch
diff --git a/python_km/input/ers/submit_modexcorr_batch → input/ers/submit_modexcorr_batch b/python_km/input/ers/submit_modexcorr_batch → input/ers/submit_modexcorr_batch
diff --git a/...n_km/input/ers/submit_modexcorr_sim_batch → input/ers/submit_modexcorr_sim_batch b/...n_km/input/ers/submit_modexcorr_sim_batch → input/ers/submit_modexcorr_sim_batch
diff --git a/...n_km/input/ers/submit_modexcorrnull_batch → input/ers/submit_modexcorrnull_batch b/...n_km/input/ers/submit_modexcorrnull_batch → input/ers/submit_modexcorrnull_batch
diff --git a/...n_km/input/ers/submit_random_DR_opt_batch → input/ers/submit_random_DR_opt_batch b/...n_km/input/ers/submit_random_DR_opt_batch → input/ers/submit_random_DR_opt_batch
diff --git a/...km/input/ers/submit_random_auto_opt_batch → input/ers/submit_random_auto_opt_batch b/...km/input/ers/submit_random_auto_opt_batch → input/ers/submit_random_auto_opt_batch
diff --git a/...km/input/ers/submit_random_auto_sim_batch → input/ers/submit_random_auto_sim_batch b/...km/input/ers/submit_random_auto_sim_batch → input/ers/submit_random_auto_sim_batch
diff --git a/python_km/input/ers/submit_random_batch → input/ers/submit_random_batch b/python_km/input/ers/submit_random_batch → input/ers/submit_random_batch
diff --git a/python_km/input/ers/submit_signal_batch → input/ers/submit_signal_batch b/python_km/input/ers/submit_signal_batch → input/ers/submit_signal_batch
diff --git a/...m/input/ers/wigglez_DR_correlate.template → input/ers/wigglez_DR_correlate.template b/...m/input/ers/wigglez_DR_correlate.template → input/ers/wigglez_DR_correlate.template
diff --git a/...put/ers/wigglez_DR_correlate_pbs.template → input/ers/wigglez_DR_correlate_pbs.template b/...put/ers/wigglez_DR_correlate_pbs.template → input/ers/wigglez_DR_correlate_pbs.template
diff --git a/...n_km/input/ers/wigglez_auto_correlate.ini → input/ers/wigglez_auto_correlate.ini b/...n_km/input/ers/wigglez_auto_correlate.ini → input/ers/wigglez_auto_correlate.ini
diff --git a/...input/ers/wigglez_auto_correlate.template → input/ers/wigglez_auto_correlate.template b/...input/ers/wigglez_auto_correlate.template → input/ers/wigglez_auto_correlate.template
diff --git a/...t/ers/wigglez_auto_correlate_pbs.template → ...t/ers/wigglez_auto_correlate_pbs.template b/...t/ers/wigglez_auto_correlate_pbs.template → ...t/ers/wigglez_auto_correlate_pbs.template
diff --git a/...put/ers/wigglez_auto_correlate_single.pbs → input/ers/wigglez_auto_correlate_single.pbs b/...put/ers/wigglez_auto_correlate_single.pbs → input/ers/wigglez_auto_correlate_single.pbs
diff --git a/python_km/input/ers/wigglez_correlate.ini → input/ers/wigglez_correlate.ini b/python_km/input/ers/wigglez_correlate.ini → input/ers/wigglez_correlate.ini
diff --git a/...n_km/input/ers/wigglez_correlate.template → input/ers/wigglez_correlate.template b/...n_km/input/ers/wigglez_correlate.template → input/ers/wigglez_correlate.template
diff --git a/...n_km/input/ers/wigglez_correlate_15AB.ini → input/ers/wigglez_correlate_15AB.ini b/...n_km/input/ers/wigglez_correlate_15AB.ini → input/ers/wigglez_correlate_15AB.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15AC.ini → input/ers/wigglez_correlate_15AC.ini b/...n_km/input/ers/wigglez_correlate_15AC.ini → input/ers/wigglez_correlate_15AC.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15AD.ini → input/ers/wigglez_correlate_15AD.ini b/...n_km/input/ers/wigglez_correlate_15AD.ini → input/ers/wigglez_correlate_15AD.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15BA.ini → input/ers/wigglez_correlate_15BA.ini b/...n_km/input/ers/wigglez_correlate_15BA.ini → input/ers/wigglez_correlate_15BA.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15BC.ini → input/ers/wigglez_correlate_15BC.ini b/...n_km/input/ers/wigglez_correlate_15BC.ini → input/ers/wigglez_correlate_15BC.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15BD.ini → input/ers/wigglez_correlate_15BD.ini b/...n_km/input/ers/wigglez_correlate_15BD.ini → input/ers/wigglez_correlate_15BD.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15CA.ini → input/ers/wigglez_correlate_15CA.ini b/...n_km/input/ers/wigglez_correlate_15CA.ini → input/ers/wigglez_correlate_15CA.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15CB.ini → input/ers/wigglez_correlate_15CB.ini b/...n_km/input/ers/wigglez_correlate_15CB.ini → input/ers/wigglez_correlate_15CB.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15CD.ini → input/ers/wigglez_correlate_15CD.ini b/...n_km/input/ers/wigglez_correlate_15CD.ini → input/ers/wigglez_correlate_15CD.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15DA.ini → input/ers/wigglez_correlate_15DA.ini b/...n_km/input/ers/wigglez_correlate_15DA.ini → input/ers/wigglez_correlate_15DA.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15DB.ini → input/ers/wigglez_correlate_15DB.ini b/...n_km/input/ers/wigglez_correlate_15DB.ini → input/ers/wigglez_correlate_15DB.ini
diff --git a/...n_km/input/ers/wigglez_correlate_15DC.ini → input/ers/wigglez_correlate_15DC.ini b/...n_km/input/ers/wigglez_correlate_15DC.ini → input/ers/wigglez_correlate_15DC.ini
diff --git a/...rs/wigglez_correlate_15modes_original.ini → ...rs/wigglez_correlate_15modes_original.ini b/...rs/wigglez_correlate_15modes_original.ini → ...rs/wigglez_correlate_15modes_original.ini
diff --git a/...gglez_correlate_15modes_original.template → ...gglez_correlate_15modes_original.template b/...gglez_correlate_15modes_original.template → ...gglez_correlate_15modes_original.template
diff --git a/python_km/input/ers/wigglez_correlate_69.ini → input/ers/wigglez_correlate_69.ini b/python_km/input/ers/wigglez_correlate_69.ini → input/ers/wigglez_correlate_69.ini
diff --git a/..._km/input/ers/wigglez_correlate_69old.ini → input/ers/wigglez_correlate_69old.ini b/..._km/input/ers/wigglez_correlate_69old.ini → input/ers/wigglez_correlate_69old.ini
diff --git a/...n_km/input/ers/wigglez_correlate_fast.ini → input/ers/wigglez_correlate_fast.ini b/...n_km/input/ers/wigglez_correlate_fast.ini → input/ers/wigglez_correlate_fast.ini
diff --git a/...nput/ers/wigglez_correlate_modes.template → input/ers/wigglez_correlate_modes.template b/...nput/ers/wigglez_correlate_modes.template → input/ers/wigglez_correlate_modes.template
diff --git a/.../ers/wigglez_correlate_modes_pbs.template → .../ers/wigglez_correlate_modes_pbs.template b/.../ers/wigglez_correlate_modes_pbs.template → .../ers/wigglez_correlate_modes_pbs.template
diff --git a/.../ers/wigglez_correlate_nullmodes.template → .../ers/wigglez_correlate_nullmodes.template b/.../ers/wigglez_correlate_nullmodes.template → .../ers/wigglez_correlate_nullmodes.template
diff --git a/.../wigglez_correlate_nullmodes_pbs.template → .../wigglez_correlate_nullmodes_pbs.template b/.../wigglez_correlate_nullmodes_pbs.template → .../wigglez_correlate_nullmodes_pbs.template
diff --git a/.../input/ers/wigglez_correlate_pbs.template → input/ers/wigglez_correlate_pbs.template b/.../input/ers/wigglez_correlate_pbs.template → input/ers/wigglez_correlate_pbs.template
diff --git a/...on_km/input/ers/wigglez_correlate_sel.ini → input/ers/wigglez_correlate_sel.ini b/...on_km/input/ers/wigglez_correlate_sel.ini → input/ers/wigglez_correlate_sel.ini
diff --git a/...on_km/input/ers/wigglez_correlate_sel.pbs → input/ers/wigglez_correlate_sel.pbs b/...on_km/input/ers/wigglez_correlate_sel.pbs → input/ers/wigglez_correlate_sel.pbs
diff --git a/...km/input/ers/wigglez_correlate_single.pbs → input/ers/wigglez_correlate_single.pbs b/...km/input/ers/wigglez_correlate_single.pbs → input/ers/wigglez_correlate_single.pbs
diff --git a/python_km/input/km/1hr_map_test.pipe → input/km/1hr_map_test.pipe b/python_km/input/km/1hr_map_test.pipe → input/km/1hr_map_test.pipe
diff --git a/python_km/input/km/calibrator_NMini.py → input/km/calibrator_NMini.py b/python_km/input/km/calibrator_NMini.py → input/km/calibrator_NMini.py
diff --git a/python_km/input/km/correlate_slices.ini → input/km/correlate_slices.ini b/python_km/input/km/correlate_slices.ini → input/km/correlate_slices.ini
diff --git a/python_km/input/km/first.pipe → input/km/first.pipe b/python_km/input/km/first.pipe → input/km/first.pipe
diff --git a/python_km/input/km/guppi.pipe → input/km/guppi.pipe b/python_km/input/km/guppi.pipe → input/km/guppi.pipe
diff --git a/python_km/input/km/mk_test_map.pipe → input/km/mk_test_map.pipe b/python_km/input/km/mk_test_map.pipe → input/km/mk_test_map.pipe
diff --git a/python_km/input/km/noise_power.ini → input/km/noise_power.ini b/python_km/input/km/noise_power.ini → input/km/noise_power.ini
diff --git a/python_km/input/km/noise_power_guppi.pipe → input/km/noise_power_guppi.pipe b/python_km/input/km/noise_power_guppi.pipe → input/km/noise_power_guppi.pipe
diff --git a/python_km/input/km/noise_power_spec.pipe → input/km/noise_power_spec.pipe b/python_km/input/km/noise_power_spec.pipe → input/km/noise_power_spec.pipe
diff --git a/python_km/input/km/power.ini → input/km/power.ini b/python_km/input/km/power.ini → input/km/power.ini
diff --git a/python_km/input/km/psrcal.ini → input/km/psrcal.ini b/python_km/input/km/psrcal.ini → input/km/psrcal.ini
diff --git a/python_km/input/km/psrfits.ini → input/km/psrfits.ini b/python_km/input/km/psrfits.ini → input/km/psrfits.ini
diff --git a/python_km/input/km/scan_test.ini → input/km/scan_test.ini b/python_km/input/km/scan_test.ini → input/km/scan_test.ini
diff --git a/python_km/input/km/solved_gains.ini → input/km/solved_gains.ini b/python_km/input/km/solved_gains.ini → input/km/solved_gains.ini
diff --git a/python_km/input/km/submap.ini → input/km/submap.ini b/python_km/input/km/submap.ini → input/km/submap.ini
diff --git a/python_km/input/lc/correlate_slices.ini → input/lc/correlate_slices.ini b/python_km/input/lc/correlate_slices.ini → input/lc/correlate_slices.ini
diff --git a/python_km/input/lc/guppi.pipe → input/lc/guppi.pipe b/python_km/input/lc/guppi.pipe → input/lc/guppi.pipe
diff --git a/python_km/input/lc/guppi.pipe2 → input/lc/guppi.pipe2 b/python_km/input/lc/guppi.pipe2 → input/lc/guppi.pipe2
diff --git a/python_km/input/tcv/complete_pol.pipe → input/tcv/complete_pol.pipe b/python_km/input/tcv/complete_pol.pipe → input/tcv/complete_pol.pipe
diff --git a/python_km/input/tcv/correlate_slices.ini → input/tcv/correlate_slices.ini b/python_km/input/tcv/correlate_slices.ini → input/tcv/correlate_slices.ini
diff --git a/python_km/input/tcv/guppi.pipe → input/tcv/guppi.pipe b/python_km/input/tcv/guppi.pipe → input/tcv/guppi.pipe
diff --git a/python_km/input/tcv/mueller_gen.ini → input/tcv/mueller_gen.ini b/python_km/input/tcv/mueller_gen.ini → input/tcv/mueller_gen.ini
diff --git a/python_km/input/tcv/mueller_gen_guppi.ini → input/tcv/mueller_gen_guppi.ini b/python_km/input/tcv/mueller_gen_guppi.ini → input/tcv/mueller_gen_guppi.ini
diff --git a/python_km/input/tcv/mueller_gen_prep.pipe → input/tcv/mueller_gen_prep.pipe b/python_km/input/tcv/mueller_gen_prep.pipe → input/tcv/mueller_gen_prep.pipe
diff --git a/..._km/input/tcv/mueller_gen_prep_guppi.pipe → input/tcv/mueller_gen_prep_guppi.pipe b/..._km/input/tcv/mueller_gen_prep_guppi.pipe → input/tcv/mueller_gen_prep_guppi.pipe
diff --git a/python_km/input/tcv/new_complete_pol.pipe → input/tcv/new_complete_pol.pipe b/python_km/input/tcv/new_complete_pol.pipe → input/tcv/new_complete_pol.pipe
diff --git a/python_km/input/tcv/pol_cal.pipe → input/tcv/pol_cal.pipe b/python_km/input/tcv/pol_cal.pipe → input/tcv/pol_cal.pipe
diff --git a/python_km/map/README → map/README b/python_km/map/README → map/README
diff --git a/python_km/map/__init__.py → map/__init__.py b/python_km/map/__init__.py → map/__init__.py
diff --git a/python_km/map/beam.py → map/beam.py b/python_km/map/beam.py → map/beam.py
diff --git a/python_km/map/clean_map.py → map/clean_map.py b/python_km/map/clean_map.py → map/clean_map.py
diff --git a/python_km/map/combine_maps.py → map/combine_maps.py b/python_km/map/combine_maps.py → map/combine_maps.py
diff --git a/python_km/map/convert_to_overdensity.py → map/convert_to_overdensity.py b/python_km/map/convert_to_overdensity.py → map/convert_to_overdensity.py
diff --git a/python_km/map/covariance.py → map/covariance.py b/python_km/map/covariance.py → map/covariance.py
diff --git a/python_km/map/dirty_map.py → map/dirty_map.py b/python_km/map/dirty_map.py → map/dirty_map.py
diff --git a/python_km/map/optical_catalog.py → map/optical_catalog.py b/python_km/map/optical_catalog.py → map/optical_catalog.py
diff --git a/python_km/map/test_beam.py → map/test_beam.py b/python_km/map/test_beam.py → map/test_beam.py
diff --git a/python_km/map/test_clean_map.py → map/test_clean_map.py b/python_km/map/test_clean_map.py → map/test_clean_map.py
diff --git a/python_km/map/test_covariance.py → map/test_covariance.py b/python_km/map/test_covariance.py → map/test_covariance.py
diff --git a/python_km/map/test_dirty_map.py → map/test_dirty_map.py b/python_km/map/test_dirty_map.py → map/test_dirty_map.py
@@ -153,6 +153,7 @@ def setUp(self) :
         self.pars = { "dm_output_root" : "./testoutput_",
                       'dm_file_middles' : ("testfile_GBTfits",),
                       'dm_input_end' : ".fits",
+                      'dm_input_root' : "testdata/",
                       'dm_scans' : (),
                       'dm_IFs' : (0,),
                       'dm_field_centre' : (325.0, 0.0),

diff --git a/python_km/map/test_tools.py → map/test_tools.py b/python_km/map/test_tools.py → map/test_tools.py
diff --git a/python_km/map/tools.py → map/tools.py b/python_km/map/tools.py → map/tools.py
diff --git a/python_km/noise/__init__.py → noise/__init__.py b/python_km/noise/__init__.py → noise/__init__.py
diff --git a/python_km/noise/analyse_solved_gains.py → noise/analyse_solved_gains.py b/python_km/noise/analyse_solved_gains.py → noise/analyse_solved_gains.py
diff --git a/python_km/noise/measure_noise.py → noise/measure_noise.py b/python_km/noise/measure_noise.py → noise/measure_noise.py
diff --git a/python_km/noise/noise_power.py → noise/noise_power.py b/python_km/noise/noise_power.py → noise/noise_power.py
diff --git a/python_km/noise/test_measure_noise.py → noise/test_measure_noise.py b/python_km/noise/test_measure_noise.py → noise/test_measure_noise.py
diff --git a/python_km/noise/test_noise_power.py → noise/test_noise_power.py b/python_km/noise/test_noise_power.py → noise/test_noise_power.py
@@ -11,7 +11,7 @@
 from core import fitsGBT
 import kiyopy.custom_exceptions as ce
 
-testfile = "testfile_GBTfits.fits"
+testfile = "testdata/testfile_GBTfits.fits"
 
 class TestWindowedPower(unittest.TestCase) :
 

diff --git a/python_km/pipeline/__init__.py → pipeline/__init__.py b/python_km/pipeline/__init__.py → pipeline/__init__.py
diff --git a/python_km/pipeline/manager.py → pipeline/manager.py b/python_km/pipeline/manager.py → pipeline/manager.py
diff --git a/python_km/pipeline/test.pipe → pipeline/test.pipe b/python_km/pipeline/test.pipe → pipeline/test.pipe
diff --git a/python_km/pipeline/test_manager.py → pipeline/test_manager.py b/python_km/pipeline/test_manager.py → pipeline/test_manager.py
diff --git a/python_km/plotting/__init__.py → plotting/__init__.py b/python_km/plotting/__init__.py → plotting/__init__.py
diff --git a/python_km/plotting/call_summary_plot.py → plotting/call_summary_plot.py b/python_km/plotting/call_summary_plot.py → plotting/call_summary_plot.py
diff --git a/...otting/call_summary_plot_recordkeeping.py → plotting/call_summary_plot_recordkeeping.py b/...otting/call_summary_plot_recordkeeping.py → plotting/call_summary_plot_recordkeeping.py
diff --git a/python_km/plotting/plot_1D_autocorr.py → plotting/plot_1D_autocorr.py b/python_km/plotting/plot_1D_autocorr.py → plotting/plot_1D_autocorr.py
diff --git a/python_km/plotting/plot_cube.py → plotting/plot_cube.py b/python_km/plotting/plot_cube.py → plotting/plot_cube.py
diff --git a/python_km/plotting/summary_plot.py → plotting/summary_plot.py b/python_km/plotting/summary_plot.py → plotting/summary_plot.py
diff --git a/python_km/plotting/summary_plot_old.py → plotting/summary_plot_old.py b/python_km/plotting/summary_plot_old.py → plotting/summary_plot_old.py
diff --git a/python_km/profile/prof_flag_data.py → profile/prof_flag_data.py b/python_km/profile/prof_flag_data.py → profile/prof_flag_data.py
diff --git a/python_km/profile/prof_hanning.py → profile/prof_hanning.py b/python_km/profile/prof_hanning.py → profile/prof_hanning.py
diff --git a/python_km/profile/prof_rebin_freq.py → profile/prof_rebin_freq.py b/python_km/profile/prof_rebin_freq.py → profile/prof_rebin_freq.py
diff --git a/python_km/profile/prof_write.py → profile/prof_write.py b/python_km/profile/prof_write.py → profile/prof_write.py
diff --git a/python_km/scripts/__init__.py → scripts/__init__.py b/python_km/scripts/__init__.py → scripts/__init__.py
diff --git a/python_km/scripts/alg2txt.py → scripts/alg2txt.py b/python_km/scripts/alg2txt.py → scripts/alg2txt.py
diff --git a/python_km/scripts/make_test_GBT_fits_file.py → scripts/make_test_GBT_fits_file.py b/python_km/scripts/make_test_GBT_fits_file.py → scripts/make_test_GBT_fits_file.py
@@ -16,7 +16,7 @@
 data_file_name  = (os.getenv('GBT10B_DATA')  + 
                   '/01_wigglez22hr_azel_17-24.raw.acs.fits')
 #                  '04_wigglez1hr_azel_113-120.raw.acs.fits')
-test_file_name = './testfile_GBTfits.fits'
+test_file_name = './testdata/testfile_GBTfits.fits'
 # Some parameters of GBT spectrometer data.  These are assumed to be
 # correct with only minimal checking.
 npol = 4 # number of polarizations

diff --git a/python_km/scripts/map2fits.py → scripts/map2fits.py b/python_km/scripts/map2fits.py → scripts/map2fits.py
diff --git a/..._km/scripts/plot_gbt_fits_image_slices.py → scripts/plot_gbt_fits_image_slices.py b/..._km/scripts/plot_gbt_fits_image_slices.py → scripts/plot_gbt_fits_image_slices.py
diff --git a/...n_km/scripts/plot_gbt_npy_image_slices.py → scripts/plot_gbt_npy_image_slices.py b/...n_km/scripts/plot_gbt_npy_image_slices.py → scripts/plot_gbt_npy_image_slices.py
diff --git a/...on_km/scripts/plot_matrix_flux_mueller.py → scripts/plot_matrix_flux_mueller.py b/...on_km/scripts/plot_matrix_flux_mueller.py → scripts/plot_matrix_flux_mueller.py
diff --git a/...ripts/plot_matrix_flux_mueller_compare.py → scripts/plot_matrix_flux_mueller_compare.py b/...ripts/plot_matrix_flux_mueller_compare.py → scripts/plot_matrix_flux_mueller_compare.py
diff --git a/python_km/scripts/plot_matrix_mueller.py → scripts/plot_matrix_mueller.py b/python_km/scripts/plot_matrix_mueller.py → scripts/plot_matrix_mueller.py
diff --git a/python_km/scripts/plot_mueller.py → scripts/plot_mueller.py b/python_km/scripts/plot_mueller.py → scripts/plot_mueller.py
diff --git a/python_km/scripts/psrfits_to_sdfits.py → scripts/psrfits_to_sdfits.py b/python_km/scripts/psrfits_to_sdfits.py → scripts/psrfits_to_sdfits.py
diff --git a/python_km/scripts/test_psrfits_to_sdfits.py → scripts/test_psrfits_to_sdfits.py b/python_km/scripts/test_psrfits_to_sdfits.py → scripts/test_psrfits_to_sdfits.py
diff --git a/python_km/simulations/Chebyshev.py → simulations/Chebyshev.py b/python_km/simulations/Chebyshev.py → simulations/Chebyshev.py
diff --git a/python_km/simulations/README.rst → simulations/README.rst b/python_km/simulations/README.rst → simulations/README.rst
diff --git a/python_km/simulations/__init__.py → simulations/__init__.py b/python_km/simulations/__init__.py → simulations/__init__.py
diff --git a/python_km/simulations/_sphbessel_c.pyx → simulations/_sphbessel_c.pyx b/python_km/simulations/_sphbessel_c.pyx → simulations/_sphbessel_c.pyx
diff --git a/python_km/simulations/beamsim.py → simulations/beamsim.py b/python_km/simulations/beamsim.py → simulations/beamsim.py
diff --git a/python_km/simulations/corr.py → simulations/corr.py b/python_km/simulations/corr.py → simulations/corr.py
diff --git a/python_km/simulations/corr21cm.py → simulations/corr21cm.py b/python_km/simulations/corr21cm.py → simulations/corr21cm.py
diff --git a/python_km/simulations/corrtest.py → simulations/corrtest.py b/python_km/simulations/corrtest.py → simulations/corrtest.py
diff --git a/python_km/simulations/cosmology.py → simulations/cosmology.py b/python_km/simulations/cosmology.py → simulations/cosmology.py
diff --git a/python_km/simulations/cubicspline.pyx → simulations/cubicspline.pyx b/python_km/simulations/cubicspline.pyx → simulations/cubicspline.pyx
diff --git a/python_km/simulations/data/corr0.dat → simulations/data/corr0.dat b/python_km/simulations/data/corr0.dat → simulations/data/corr0.dat
diff --git a/python_km/simulations/data/corr_z1.5.dat → simulations/data/corr_z1.5.dat b/python_km/simulations/data/corr_z1.5.dat → simulations/data/corr_z1.5.dat
diff --git a/python_km/simulations/data/dmcorr.dat → simulations/data/dmcorr.dat b/python_km/simulations/data/dmcorr.dat → simulations/data/dmcorr.dat
diff --git a/python_km/simulations/data/ps.dat → simulations/data/ps.dat b/python_km/simulations/data/ps.dat → simulations/data/ps.dat
diff --git a/python_km/simulations/data/ps_cmb2.dat → simulations/data/ps_cmb2.dat b/python_km/simulations/data/ps_cmb2.dat → simulations/data/ps_cmb2.dat
diff --git a/python_km/simulations/data/ps_z1.5.dat → simulations/data/ps_z1.5.dat b/python_km/simulations/data/ps_z1.5.dat → simulations/data/ps_z1.5.dat
diff --git a/python_km/simulations/fftutil.py → simulations/fftutil.py b/python_km/simulations/fftutil.py → simulations/fftutil.py
diff --git a/python_km/simulations/fmtest.py → simulations/fmtest.py b/python_km/simulations/fmtest.py → simulations/fmtest.py
diff --git a/python_km/simulations/foreground.py → simulations/foreground.py b/python_km/simulations/foreground.py → simulations/foreground.py
diff --git a/python_km/simulations/foregroundmap.py → simulations/foregroundmap.py b/python_km/simulations/foregroundmap.py → simulations/foregroundmap.py
diff --git a/python_km/simulations/foregroundsck.py → simulations/foregroundsck.py b/python_km/simulations/foregroundsck.py → simulations/foregroundsck.py
diff --git a/python_km/simulations/gaussianfield.py → simulations/gaussianfield.py b/python_km/simulations/gaussianfield.py → simulations/gaussianfield.py
diff --git a/python_km/simulations/kl1d.py → simulations/kl1d.py b/python_km/simulations/kl1d.py → simulations/kl1d.py
diff --git a/python_km/simulations/kl1dgen.py → simulations/kl1dgen.py b/python_km/simulations/kl1dgen.py → simulations/kl1dgen.py
diff --git a/python_km/simulations/kl1dplots.py → simulations/kl1dplots.py b/python_km/simulations/kl1dplots.py → simulations/kl1dplots.py
diff --git a/python_km/simulations/lofar.py → simulations/lofar.py b/python_km/simulations/lofar.py → simulations/lofar.py
diff --git a/python_km/simulations/lofarplot.py → simulations/lofarplot.py b/python_km/simulations/lofarplot.py → simulations/lofarplot.py
diff --git a/python_km/simulations/maps.py → simulations/maps.py b/python_km/simulations/maps.py → simulations/maps.py
diff --git a/python_km/simulations/pointsource.py → simulations/pointsource.py b/python_km/simulations/pointsource.py → simulations/pointsource.py
diff --git a/python_km/simulations/poisson.py → simulations/poisson.py b/python_km/simulations/poisson.py → simulations/poisson.py
diff --git a/python_km/simulations/ps_estimation.py → simulations/ps_estimation.py b/python_km/simulations/ps_estimation.py → simulations/ps_estimation.py
diff --git a/python_km/simulations/pstest.py → simulations/pstest.py b/python_km/simulations/pstest.py → simulations/pstest.py
diff --git a/python_km/simulations/radialprofile.py → simulations/radialprofile.py b/python_km/simulations/radialprofile.py → simulations/radialprofile.py
diff --git a/python_km/simulations/setup.py → simulations/setup.py b/python_km/simulations/setup.py → simulations/setup.py
diff --git a/...n_km/simulations/signalrealisationtest.py → simulations/signalrealisationtest.py b/...n_km/simulations/signalrealisationtest.py → simulations/signalrealisationtest.py
diff --git a/python_km/simulations/sphbessel.py → simulations/sphbessel.py b/python_km/simulations/sphbessel.py → simulations/sphbessel.py
diff --git a/python_km/simulations/testsck.py → simulations/testsck.py b/python_km/simulations/testsck.py → simulations/testsck.py
diff --git a/python_km/simulations/units.py → simulations/units.py b/python_km/simulations/units.py → simulations/units.py
diff --git a/testdata/testfile_GBTfits.fits b/testdata/testfile_GBTfits.fits
diff --git a/python_km/time_stream/__init__.py → time_stream/__init__.py b/python_km/time_stream/__init__.py → time_stream/__init__.py
diff --git a/python_km/time_stream/base_single.py → time_stream/base_single.py b/python_km/time_stream/base_single.py → time_stream/base_single.py
@@ -28,7 +28,7 @@
 # Parameters relevant for all modules that inherit from this one.
 base_params = {
                # IO:
-               'input_root' : './',
+               'input_root' : './testdata/',
                # The unique part of every fname
                'file_middles' : ("testfile_GBTfits",),
                'input_end' : ".fits",

diff --git a/python_km/time_stream/cal_scale.py → time_stream/cal_scale.py b/python_km/time_stream/cal_scale.py → time_stream/cal_scale.py
diff --git a/python_km/time_stream/calibrate.py → time_stream/calibrate.py b/python_km/time_stream/calibrate.py → time_stream/calibrate.py
diff --git a/python_km/time_stream/combine_cal.py → time_stream/combine_cal.py b/python_km/time_stream/combine_cal.py → time_stream/combine_cal.py
diff --git a/python_km/time_stream/flag_data.py → time_stream/flag_data.py b/python_km/time_stream/flag_data.py → time_stream/flag_data.py
diff --git a/python_km/time_stream/flux_pol_cal.py → time_stream/flux_pol_cal.py b/python_km/time_stream/flux_pol_cal.py → time_stream/flux_pol_cal.py
diff --git a/python_km/time_stream/hanning.py → time_stream/hanning.py b/python_km/time_stream/hanning.py → time_stream/hanning.py
diff --git a/python_km/time_stream/pol_cal.py → time_stream/pol_cal.py b/python_km/time_stream/pol_cal.py → time_stream/pol_cal.py
diff --git a/python_km/time_stream/rebin_freq.py → time_stream/rebin_freq.py b/python_km/time_stream/rebin_freq.py → time_stream/rebin_freq.py
diff --git a/python_km/time_stream/reflag.py → time_stream/reflag.py b/python_km/time_stream/reflag.py → time_stream/reflag.py
diff --git a/python_km/time_stream/rotate_pol.py → time_stream/rotate_pol.py b/python_km/time_stream/rotate_pol.py → time_stream/rotate_pol.py
diff --git a/...on_km/time_stream/stitch_windows_crude.py → time_stream/stitch_windows_crude.py b/...on_km/time_stream/stitch_windows_crude.py → time_stream/stitch_windows_crude.py
diff --git a/python_km/time_stream/subtract_map_data.py → time_stream/subtract_map_data.py b/python_km/time_stream/subtract_map_data.py → time_stream/subtract_map_data.py
diff --git a/python_km/time_stream/test_base_single.py → time_stream/test_base_single.py b/python_km/time_stream/test_base_single.py → time_stream/test_base_single.py
@@ -18,7 +18,7 @@ def nothing_to_do(self, Data) :
 
 
 input_parameters = {
-          'nt_input_root' : './testfile_GBTfits',
+          'nt_input_root' : './testdata/testfile_GBTfits',
           'nt_file_middles' : ("",),
           'nt_input_end' : ".fits",
           'nt_output_root' : "./temp_test_",

diff --git a/python_km/time_stream/test_cal_scale.py → time_stream/test_cal_scale.py b/python_km/time_stream/test_cal_scale.py → time_stream/test_cal_scale.py
@@ -9,7 +9,7 @@
 from time_stream import cal_scale, rebin_freq, hanning
 from core import data_block, fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestCalScale(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_calibrate.py → time_stream/test_calibrate.py b/python_km/time_stream/test_calibrate.py → time_stream/test_calibrate.py
@@ -11,7 +11,7 @@
 from core import fitsGBT, data_block
 import calibrate, rebin_freq
 
-test_filename = 'testfile_GBTfits.fits'
+test_filename = 'testdata/testfile_GBTfits.fits'
 
 class TestMultipyFunction(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_combine_cal.py → time_stream/test_combine_cal.py b/python_km/time_stream/test_combine_cal.py → time_stream/test_combine_cal.py
@@ -9,7 +9,7 @@
 from time_stream import combine_cal, rebin_freq, hanning
 from core import data_block, fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestCombineCal(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_flag_data.py → time_stream/test_flag_data.py b/python_km/time_stream/test_flag_data.py → time_stream/test_flag_data.py
@@ -14,7 +14,7 @@
 from time_stream import hanning
 from core import data_block, fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestFlagData(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_pol_cal.py → time_stream/test_pol_cal.py b/python_km/time_stream/test_pol_cal.py → time_stream/test_pol_cal.py
@@ -11,7 +11,7 @@
 import pol_cal
 import rotate_pol
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 test_mueler_file = 'mueller_params_calc.txt'
 n_pointings = 10 # Known property of test_file.  Per scan.
 

diff --git a/python_km/time_stream/test_rebin.py → time_stream/test_rebin.py b/python_km/time_stream/test_rebin.py → time_stream/test_rebin.py
@@ -12,7 +12,7 @@
 import core.data_block
 import core.fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestFunctions(unittest.TestCase) :
     """Since these operations actually changes the data, these are only sanity

diff --git a/python_km/time_stream/test_reflag.py → time_stream/test_reflag.py b/python_km/time_stream/test_reflag.py → time_stream/test_reflag.py
@@ -12,7 +12,7 @@
 import rotate_pol
 import combine_cal
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestFlag(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_rotate_pol.py → time_stream/test_rotate_pol.py b/python_km/time_stream/test_rotate_pol.py → time_stream/test_rotate_pol.py
@@ -9,7 +9,7 @@
 from time_stream import rotate_pol
 from core import data_block, fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestRotate(unittest.TestCase) :
 

diff --git a/python_km/time_stream/test_stitch_windows.py → time_stream/test_stitch_windows.py b/python_km/time_stream/test_stitch_windows.py → time_stream/test_stitch_windows.py
@@ -11,7 +11,7 @@
 import stitch_windows_crude as swc
 from core import data_block, fitsGBT
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 
 class TestStitchWindowsCrude(unittest.TestCase) :
 

diff --git a/..._km/time_stream/test_subtract_map_data.py → time_stream/test_subtract_map_data.py b/..._km/time_stream/test_subtract_map_data.py → time_stream/test_subtract_map_data.py
@@ -13,7 +13,7 @@
 import rotate_pol
 
 
-test_file = 'testfile_GBTfits.fits'
+test_file = 'testdata/testfile_GBTfits.fits'
 n_pointings = 10 # Known property of test_file.  Per scan.
 
 class TestSubMap(unittest.TestCase) :