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Remove seqbin size filter.
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kjolley committed Nov 30, 2020
1 parent 277efd2 commit 3cd058e
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Showing 2 changed files with 11 additions and 5 deletions.
8 changes: 3 additions & 5 deletions data_query/0070_querying_isolate_data.rst
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Expand Up @@ -294,13 +294,11 @@ within it. Common filters are:
* started - At least one locus has an allele designated. The scheme mat be
complete or partial.
* not started - The scheme has no loci with alleles designated.
* Sequence bin - Specify whether any sequence data has been associated with a
record. Specific threshold values may be selected if these have been
:ref:`set up for the database <isolate_xml>`.
* Provenance fields - Dropdown list boxes of values for specific provenance

* Provenance fields - Dropdown list boxes of values for specific provenance
fields may be present if set for the database. Users can choose to
:ref:`add additional filters <modify_query_filters>`.
* Old record versions - Checkbox which, if selected, will include all record
* Old record versions - Checkbox which, if selected, will include all record
versions in a query.

.. index::
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8 changes: 8 additions & 0 deletions dbase_setup.rst
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Expand Up @@ -489,6 +489,14 @@ Any value set here can be overridden in a
included in an Microreact job. Default: 100,000 (this can also be set
globally in bigsdb.conf).

* min_genome_size

* Size in bp that is the minimum size of the sequence bin considered to
represent a whole genome. This is used in the REST interface to
differentiate records with genomes. You can also pass a 'genomes=1'
attribute to the an isolate query form and this will populate the
appropriate search to return genome records.

* new_version

* Set to 'no' to prevent copying field value when creating a new version of
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