Add system attributes to set various plugin limits.

dbase_setup.rst

@@ -125,6 +125,11 @@ Top level element. Contains child elements: system, field and sample.::
 
   * Description of database used throughout interface.
 
+* align_limit
+
+  * Overrides the sequence export record alignment limit in the Sequence
+    Export plugin.  Default: '200'.
+
 * all_plugins  
 
   * Enable all appropriate plugins for database: either 'yes' or 'no', default
@@ -137,6 +142,14 @@ Top level element. Contains child elements: system, field and sample.::
     'AL157959|Z2491;AM421808|FAM18;NC_002946|FA 1090;NC_011035|NCCP11945;NC_014752|020-06'.
     Currently used only by Genome Comparator plugin.
 
+* codon_usage_limit
+
+  * Overrides the record limit for the Codon Usage plugin.  Default: '500'.
+
+* contig_analysis_limit
+
+  * Overrides the isolate number limit for the Contig Export plugin.  Default: '1000'.
+
 * curate_only
 
   * Set to 'yes' to hide field on an isolate information page in the standard
@@ -185,6 +198,11 @@ Top level element. Contains child elements: system, field and sample.::
     of the group followed by a colon (:) followed by a comma-separated list of
     fields to group, e.g. identifiers:id,strain,other_name.
 
+* genome_comparator_limit
+
+  * Overrides the isolate number limit for the Genome Comparator plugin.
+    Default: '1000'.
+
 * hide_unused_schemes   
 
   * Sets whether a scheme is shown in a main results table if none of the
@@ -266,6 +284,11 @@ Top level element. Contains child elements: system, field and sample.::
   * Sets the size values in Mbp to enable for the 
     :ref:`seqbin filter <seqbin_filter>`.
   * Example: seqbin_size_threshold="0.5,1,2,4".
+
+* seq_export_limit
+
+  * Overrides the sequence export limit (records x loci) in the Sequence
+    Export plugin.  Default: '1000000'.
 
 * sets   
 
@@ -453,6 +476,11 @@ Top level element. Contains child elements: system, field and sample.
 
   * Description of database used throughout interface.
 
+* align_limit
+
+  * Overrides the sequence export record alignment limit in the Sequence
+    Export plugin.  Default: '200'.
+
 * allele_comments
 
   * Enable comments on allele sequences: either 'yes' or 'no', default 'no'.
@@ -504,6 +532,11 @@ Top level element. Contains child elements: system, field and sample.
   * Partial path of the bigsdb.pl script used to access the database. See
     :ref:`user authentication <user_authentication>`.
 
+* seq_export_limit
+
+  * Overrides the sequence export limit (records x loci) in the Sequence
+    Export plugin.  Default: '1000000'.
+
 * sets
 
   * Use :ref:`sets <sets>`: either 'yes' or 'no', default 'no'.