'Alternative start codon' flag.

kjolley · Dec 10, 2019 · a524f2d · a524f2d
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diff --git a/appendix.rst b/appendix.rst
@@ -56,6 +56,10 @@ Sequence tag flags
 ******************
 Sequences tagged in the sequence bin can have features indicated by specific flags.  The presence of these flags can be queried.  These are a superset of :ref:`flags available for allele sequences <allele_sequence_flags>`. Available flags are:
 
+* alternative start codon
+
+  * A start codon other than ATG, GTG, or TTG is used. This can be the case with some yeasts.
+
 * ambiguous read
 
   * Genome sequence contains ambiguous nucleotides in coding sequence.
@@ -115,6 +119,10 @@ Allele sequence flags
 *********************
 Sequences can be flagged with specific attributes - these are searchable when doing a sequence attribute query.  These are a subset of :ref:`flags available for tagged sequences <sequence_tag_flags>`. These are mainly for use with whole genome MLST type data.  Multiple flags can be selected by Ctrl-clicking the list.  Available flags are:
 
+* alternative start codon
+
+  * A start codon other than ATG, GTG, or TTG is used. This can be the case with some yeasts.
+
 * atypical
 
   * Catch-all term for a sequence that is unusual compared to other alleles of locus.

diff --git a/conf.py b/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '1.24.0'
+version = '1.25.0'
 # The full version, including alpha/beta/rc tags.
-release = '1.24.0'
+release = '1.25.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.