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Add new filtering options for batch allele upload.
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kjolley committed Nov 16, 2023
1 parent e39d786 commit a776666
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5 changes: 4 additions & 1 deletion curator_guide/0020_adding_new_alleles.rst
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Expand Up @@ -115,15 +115,18 @@ sender from the dropdown box.

Additionally, there are a number of options available. Some of these will
ignore sequences if they don't match certain criteria - this is useful when
sequence data has been extracted from genomes automatically. Available options
sequence data has been extracted from genomes automatically. Available options
are:

* Ignore existing or duplicate sequences.
* Ignore sequences containing non-nucleotide characters.
* Silently reject all sequences that are not complete reading frames - these
must have a start and in-frame stop codon at the ends and no internal stop
codons. Existing sequences are also ignored.
* Silently reject sequences that fail similarity check.
* Override sequence similarity check.
* Silently reject sequences that fail length check.
* Override sequence length check.

.. image:: /images/curation/add_alleles5.png

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