Remove experiments.

kjolley · Feb 16, 2021 · a8c0067 · a8c0067
1 parent 0bbd195
commit a8c0067
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Showing 7 changed files with 2 additions and 16 deletions.
diff --git a/administration.rst b/administration.rst
@@ -76,8 +76,6 @@ Individual permissions can be set for each curator:
 * modify_schemes - allowed to add or modify schemes.
 * modify_sequences - allowed to add sequences to the sequence bin (for isolate
   databases) or new allele definitions (for sequence definition databases).
-* modify_experiments - define new experiments that can be used to group contigs
-  uploaded to the sequence bin.
 * modify_isolates - allowed to add or modify isolate records.
 * modify_projects - allowed to create projects, modify their descriptions and
   add or remove isolate records to these.

diff --git a/conf.py b/conf.py
@@ -54,9 +54,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '1.30.0'
+version = '1.31.0'
 # The full version, including alpha/beta/rc tags.
-release = '1.30.0'
+release = '1.31.0'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/curator_guide/0160_uploading_contigs.rst b/curator_guide/0160_uploading_contigs.rst
@@ -54,12 +54,6 @@ On the upload form, you can select to filter out short sequences or those
 containing only homopolymeric repeats (which can be artefactually produced
 by some assembler software versions) from your contig list.
 
-If your database has experiments defined (experiments are used for grouping 
-sequences and can be used to filter the sequences used in 
-:ref:`tag scanning <tag_scanning>`), you can also choose to upload your contigs
-as part of an experiment. To do this, select the experiment from the dropdown 
-list box.
-
 .. image:: /images/curation/upload_contigs9.png
 
 .. _upload_contigs_batch:

diff --git a/data_analysis/blast.rst b/data_analysis/blast.rst
@@ -106,6 +106,3 @@ Available options are:
   contigs were uploaded.
 * Project - Only include isolates belonging to the chosen project. This 
   enables you to select all isolates and filter to a project.
-* Experiment - Contig files can belong to an experiment. How this is used can
-  vary between databases, but this enables you to only include contigs from a 
-  particular experiment.
diff --git a/data_analysis/genome_comparator.rst b/data_analysis/genome_comparator.rst
@@ -211,9 +211,6 @@ Available options are:
   contigs were uploaded.
 * Project - Only include isolates belonging to the chosen project.  This 
   enables you to select all isolates and filter to a project.
-* Experiment - Contig files can belong to an experiment.  How this is used can
-  vary between databases, but this enables you to only include contigs from a 
-  particular experiment.
 
 Understanding the output
 ========================

diff --git a/images/data_analysis/blast10.png b/images/data_analysis/blast10.png
diff --git a/images/data_analysis/genome_comparator14.png b/images/data_analysis/genome_comparator14.png