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title={A simple analysis of disease foci},
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year={1996}
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title={Din{\^a}mica e estrutura de focos da clorose variegada dos citros (CVC)},
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}
@InBook{chapter2007,
author = {{Madden}, {Laurence V.} and {Hughes}, {Gareth} and {van den Bosch}, {Frank}},
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year = {2007},
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date = {2007-08-02},
doi = {10.1094/9780890545058.009},
url = {http://dx.doi.org/10.1094/9780890545058.009},
}
@Book{madden2007,
author = {Madden, Laurence V. and Hughes, Gareth and {van den Bosch}, Frank},
publisher = {The American Phytopathological Society},
title = {The Study of Plant Disease Epidemics},
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month = {08},
date = {2007-08-02},
doi = {10.1094/9780890545058},
url = {http://dx.doi.org/10.1094/9780890545058},
}
@article{jeger2001,
title = {The use of the area under the disease-progress curve (AUDPC) to assess quantitative disease resistance in crop cultivars},
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url = {http://dx.doi.org/10.1007/s001220051615},
langid = {en}
}
@article{simko2012,
title = {The Area Under the Disease Progress Stairs: Calculation, Advantage, and Application},
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url = {http://dx.doi.org/10.1094/phyto-07-11-0216},
langid = {en}
}
@Article{xu2004,
author = {Xu, X.-M. and Madden, L. V.},
journal = {Plant Pathology},
title = {Use of {SADIE} statistics to study spatial dynamics of plant disease epidemics},
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month = {02},
number = {1},
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volume = {53},
date = {2004-02},
doi = {10.1111/j.1365-3059.2004.00949.x},
langid = {en},
url = {http://dx.doi.org/10.1111/j.1365-3059.2004.00949.x},
}
@article{li2011,
title = {Spatial analysis by distance indices: an alternative local clustering index for studying spatial patterns},
author = {Li, Baohua and Madden, Laurence V. and Xu, Xiangming},
year = {2011},
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date = {2011-11-11},
journal = {Methods in Ecology and Evolution},
pages = {368--377},
volume = {3},
number = {2},
doi = {10.1111/j.2041-210x.2011.00165.x},
url = {http://dx.doi.org/10.1111/j.2041-210x.2011.00165.x},
langid = {en}
}
@article{bock2021,
title = {A phytopathometry glossary for the twenty-first century: towards consistency and precision in intra- and inter-disciplinary dialogues},
author = {Bock, Clive H. and Pethybridge, Sarah J. and Barbedo, Jayme G. A. and Esker, Paul D. and Mahlein, Anne-Katrin and Del Ponte, Emerson M.},
year = {2021},
month = {08},
date = {2021-08-02},
journal = {Tropical Plant Pathology},
pages = {14--24},
volume = {47},
number = {1},
doi = {10.1007/s40858-021-00454-0},
url = {http://dx.doi.org/10.1007/s40858-021-00454-0},
langid = {en}
}
@article{nutter2006,
title = {Disease Assessment Concepts and the Advancements Made in Improving the Accuracy and Precision of Plant Disease Data},
author = {Nutter, Forrest W. and Esker, Paul D. and Netto, Rosalee A. Coelho},
year = {2006},
month = {05},
date = {2006-05},
journal = {European Journal of Plant Pathology},
pages = {95--103},
volume = {115},
number = {1},
doi = {10.1007/s10658-005-1230-z},
url = {http://dx.doi.org/10.1007/s10658-005-1230-z},
langid = {en}
}
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title = {Intraclass correlations: Uses in assessing rater reliability.},
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langid = {en}
}
@article{barnhart2002,
title = {Overall Concordance Correlation Coefficient for Evaluating Agreement Among Multiple Observers},
author = {Barnhart, Huiman X. and Haber, Michael and Song, Jingli},
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langid = {en}
}
@article{lin1989,
title = {A Concordance Correlation Coefficient to Evaluate Reproducibility},
author = {Lin, Lawrence I-Kuei},
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}
@article{olivoto2022,
title = {Measuring plant disease severity in R: introducing and evaluating the pliman package},
author = {Olivoto, Tiago and Andrade, Sheila M. P. and M. Del Ponte, Emerson},
year = {2022},
month = {02},
date = {2022-02},
journal = {Tropical Plant Pathology},
pages = {95--104},
volume = {47},
number = {1},
doi = {10.1007/s40858-021-00487-5},
url = {http://dx.doi.org/10.1007/s40858-021-00487-5},
langid = {en}
}
@article{olivoto2022a,
title = {Lights, camera, pliman! An R package for plant image analysis},
author = {Olivoto, Tiago},
year = {2022},
month = {02},
date = {2022-02-12},
journal = {Methods in Ecology and Evolution},
pages = {789--798},
volume = {13},
number = {4},
doi = {10.1111/2041-210x.13803},
url = {http://dx.doi.org/10.1111/2041-210X.13803},
langid = {en}
}
@article{delponte2017,
title = {Standard Area Diagrams for Aiding Severity Estimation: Scientometrics, Pathosystems, and Methodological Trends in the Last 25 Years},
author = {Del Ponte, Emerson M. and Pethybridge, Sarah J. and Bock, Clive H. and Michereff, Sami J. and Machado, Franklin J. and Spolti, {Piérri}},
year = {2017},
month = {10},
date = {2017-10},
journal = {Phytopathology®},
pages = {1161--1174},
volume = {107},
number = {10},
doi = {10.1094/phyto-02-17-0069-fi},
url = {http://dx.doi.org/10.1094/PHYTO-02-17-0069-FI},
langid = {en}
}
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author = {Moran, P. A. P.},
journal = {Biometrika},
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number = {1/2},
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doi = {10.2307/2332142},
publisher = {{JSTOR}},
}
@Book{Campbell1990,
author = {Campbell, C. L. and Madden. L., V.},
publisher = {Wiley},
title = {Introduction to plant disease epidemiology},
year = {1990},
isbn = {0471832367},
pages = {532},
}
@Manual{gigot2018,
title = {epiphy: Analysis of Plant Disease Epidemics},
author = {Christophe Gigot},
note = {http://epiphy.org, https://github.com/chgigot/epiphy},
year = {2018},
}
@Comment{jabref-meta: databaseType:bibtex;}
@inbook{agrios2005b,
title = {Plant Disease Epidemiology},
author = {Agrios, George N.},
year = {2005},
date = {2005},
publisher = {Elsevier},
pages = {265--291},
doi = {10.1016/b978-0-08-047378-9.50014-2},
url = {http://dx.doi.org/10.1016/b978-0-08-047378-9.50014-2}
}
@book{plantdi1963,
title = {Plant Disease Epidemics and Control},
author = {Vanderplank, J},
year = {1963},
date = {1963},
publisher = {Elsevier},
doi = {10.1016/c2013-0-11642-x},
url = {http://dx.doi.org/10.1016/C2013-0-11642-X}
}
@article{zadoks1988,
title = {James Edward Vanderplank: Maverick* and Innovator},
author = {Zadoks, J. C. and Schein, R. D.},
year = {1988},
month = {09},
date = {1988-09},
journal = {Annual Review of Phytopathology},
pages = {31--37},
volume = {26},
number = {1},
doi = {10.1146/annurev.py.26.090188.000335},
url = {http://dx.doi.org/10.1146/annurev.py.26.090188.000335},
langid = {en}
}
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title = {In memory of James Edward Vanderplank 1909{\textendash}1997},
author = {Thresh, J. M.},
year = {1998},
month = {04},
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pages = {114--115},
volume = {47},
number = {2},
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url = {http://dx.doi.org/10.1046/j.1365-3059.2998.00220.x},
langid = {en}
}
@article{mikaberidze2016,
title = {Invasiveness of plant pathogens depends on the spatial scale of host distribution},
author = {Mikaberidze, Alexey and Mundt, Christopher C. and Bonhoeffer, Sebastian},
year = {2016},
month = {06},
date = {2016-06},
journal = {Ecological Applications},
pages = {1238--1248},
volume = {26},
number = {4},
doi = {10.1890/15-0807},
url = {http://dx.doi.org/10.1890/15-0807},
langid = {en}
}
@article{Sackett2005,
title = {Primary Disease Gradients of Wheat Stripe Rust in Large Field Plots},
author = {Sackett, Kathryn E. and Mundt, Christopher C.},
year = {2005},
month = {09},
date = {2005-09},
journal = {Phytopathology®},
pages = {983--991},
volume = {95},
number = {9},
doi = {10.1094/phyto-95-0983},
url = {http://dx.doi.org/10.1094/PHYTO-95-0983},
langid = {en}
}
@misc{mikaberidze2015,
title = {Data from: Invasiveness of plant pathogens depends on the spatial scale of host distribution},
author = {Mikaberidze, Alexey and Mundt, Christopher C. and Bonhoeffer, Sebastian},
year = {2015},
date = {2015},
publisher = {Dryad},
doi = {10.5061/DRYAD.F2J8S},
url = {http://datadryad.org/stash/dataset/doi:10.5061/dryad.f2j8s},
langid = {en}
}
@article{mundt1999,
title = {Primary Disease Gradients of Bacterial Blight of Rice},
author = {Mundt, Christopher C. and Ahmed, Hafiz U. and Finckh, Maria R. and Nieva, Lorna P. and Alfonso, Rizal F.},
year = {1999},
month = {01},
date = {1999-01},
journal = {Phytopathology®},
pages = {64--67},
volume = {89},
number = {1},
doi = {10.1094/phyto.1999.89.1.64},
url = {http://dx.doi.org/10.1094/phyto.1999.89.1.64},
langid = {en}
}
@article{parker1997,
title = {Directional Spread of Septoria Leaf Spot in Tomato Rows},
author = {Parker, S. K. and Nutter, F. W. and Gleason, M. L.},
year = {1997},
month = {03},
date = {1997-03},
journal = {Plant Disease},
pages = {272--276},
volume = {81},
number = {3},
doi = {10.1094/pdis.1997.81.3.272},
url = {http://dx.doi.org/10.1094/pdis.1997.81.3.272},
langid = {en}
}
@article{alves2021,
title = {RGB-based phenotyping of foliar disease severity under controlled conditions},
author = {Alves, Kaique S. and {Guimarães}, Mariana and Ascari, {João Paulo} and Queiroz, Marcia F. and Alfenas, Rafael F. and Mizubuti, Eduardo S. G. and Del Ponte, Emerson M.},
year = {2021},
month = {07},
date = {2021-07-22},
journal = {Tropical Plant Pathology},
pages = {105--117},
volume = {47},
number = {1},
doi = {10.1007/s40858-021-00448-y},
url = {http://dx.doi.org/10.1007/S40858-021-00448-Y},
langid = {en}
}
@article{francl2001,
title = {The..Disease Triangle: A Plant Pathological Paradigm Revisited.},
author = {Francl, L. J.},
year = {2001},
date = {2001},
journal = {The Plant Health Instructor},
doi = {10.1094/phi-t-2001-0517-01},
url = {http://dx.doi.org/10.1094/PHI-T-2001-0517-01}
}
@article{Chiang2022,
title = {Understanding the ramifications of quantitative ordinal scales on accuracy of estimates of disease severity and data analysis in plant pathology},
author = {Chiang, Kuo-Szu and Bock, Clive H.},
year = {2021},
month = {07},
date = {2021-07-13},
journal = {Tropical Plant Pathology},
pages = {58--73},
volume = {47},
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