To use clone version to someplace on LUNA. Then to run
$CLONEDIR/bProcess.sh <PIPELINE_OUTPUT_DIR>
For example:
/home/socci/Code/Bin/PostProcessV1/bProcess.sh /ifs/res/seq/faginj/knaufj/Proj_05873_D/r_002
which should create if successful:
-
Proj_05873_D___SOMATIC.vep.maf
- Somatic MAF file annotated with VEP -
Proj_05873_D___FILLOUT.vep.maf
- Global FillOut of events in Somatic MAF