A Question of Demo Script

[KforKuma]

I am a noob for bioinfo, especially on python. So this question might be a lil bit dumb.
I have tried the demo script of Readme.md, following the instruction step by step. My current Tensorflow version is 1.14.0 and python 3.6.2. I repeatedly meet a question when I go down to this line:

model = SCPHERE(n_gene=x.shape[1], batn_batch=[30, 3, 2],
z_dim=2, latent_dist='vmf', batch_invariant=False,
observation_dist='nb', seed=0)

The Error is:

Traceback` (most recent call last):
File "", line 3, in
TypeError: init() got an unexpected keyword argument 'batn_batch'

I have tried 'pip uninstall' and re-install tensorflow, re-install python for a proper version, and checked the variable and matrix but this error always recur. Did I miss something? I would be reallly thx for any suggestion.

BTW, if I want to embed a few batches of single cell data with scPhere, should I merge the expression matrix into one, and re-organize group info as batch_p/h/l ?

[Jerry001]

Hi KforKuma,

Sorry for the late reply because I just checked repo. It seems that you have a typo in your command: batn_batch should be n_batch

Thanks. Please let me know if you have further questions.

Jiarui