moved tests to tools

knausb · Sep 8, 2017 · 124910d · 124910d
1 parent a34298b
commit 124910d
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Showing 31 changed files with 10 additions and 0 deletions.
diff --git a/tests/testthat/test_001_vcfR.R b/tests/testthat/test_001_vcfR.R
@@ -8,6 +8,14 @@ library(vcfR)
 #
 context("vcfR functions")
 
+##### ##### ##### ##### #####
+#
+# Tests for functions that work on vcfR objects.
+# Tests for reading and writing vcfR objects
+# occur elsewhere.
+#
+##### ##### ##### ##### #####
+
 
 ##### ##### ##### ##### #####
 #
@@ -47,3 +55,5 @@ test_that("vcfR subsetters works",{
 })
 
 
+##### ##### ##### ##### #####
+# EOF.
diff --git a/tests/testthat/test_10_write_vcf.R → tools/testthat/test_10_write_vcf.R b/tests/testthat/test_10_write_vcf.R → tools/testthat/test_10_write_vcf.R
diff --git a/tests/testthat/test_1_vcf.R → tools/testthat/test_1_vcf.R b/tests/testthat/test_1_vcf.R → tools/testthat/test_1_vcf.R
diff --git a/tests/testthat/test_2_chromR.R → tools/testthat/test_2_chromR.R b/tests/testthat/test_2_chromR.R → tools/testthat/test_2_chromR.R
diff --git a/tests/testthat/test_3_extract_gt.R → tools/testthat/test_3_extract_gt.R b/tests/testthat/test_3_extract_gt.R → tools/testthat/test_3_extract_gt.R
diff --git a/tests/testthat/test_4_vcfR2DNAbin.R → tools/testthat/test_4_vcfR2DNAbin.R b/tests/testthat/test_4_vcfR2DNAbin.R → tools/testthat/test_4_vcfR2DNAbin.R
diff --git a/tests/testthat/test_INFO2df.R → tools/testthat/test_INFO2df.R b/tests/testthat/test_INFO2df.R → tools/testthat/test_INFO2df.R
diff --git a/tests/testthat/test_ad_frequency.R → tools/testthat/test_ad_frequency.R b/tests/testthat/test_ad_frequency.R → tools/testthat/test_ad_frequency.R
diff --git a/tests/testthat/test_addID.R → tools/testthat/test_addID.R b/tests/testthat/test_addID.R → tools/testthat/test_addID.R
diff --git a/tests/testthat/test_chromR_method.R → tools/testthat/test_chromR_method.R b/tests/testthat/test_chromR_method.R → tools/testthat/test_chromR_method.R
diff --git a/tests/testthat/test_chromo_plot.R → tools/testthat/test_chromo_plot.R b/tests/testthat/test_chromo_plot.R → tools/testthat/test_chromo_plot.R
diff --git a/tests/testthat/test_chromoqc.R → tools/testthat/test_chromoqc.R b/tests/testthat/test_chromoqc.R → tools/testthat/test_chromoqc.R
diff --git a/tests/testthat/test_conversion.R → tools/testthat/test_conversion.R b/tests/testthat/test_conversion.R → tools/testthat/test_conversion.R
diff --git a/tests/testthat/test_drplot.R → tools/testthat/test_drplot.R b/tests/testthat/test_drplot.R → tools/testthat/test_drplot.R
diff --git a/tests/testthat/test_freq_peak.R → tools/testthat/test_freq_peak.R b/tests/testthat/test_freq_peak.R → tools/testthat/test_freq_peak.R
diff --git a/tests/testthat/test_genetic_diff.R → tools/testthat/test_genetic_diff.R b/tests/testthat/test_genetic_diff.R → tools/testthat/test_genetic_diff.R
diff --git a/...testthat/test_genotype_matrix_functions.R → ...testthat/test_genotype_matrix_functions.R b/...testthat/test_genotype_matrix_functions.R → ...testthat/test_genotype_matrix_functions.R
diff --git a/tests/testthat/test_get.R → tools/testthat/test_get.R b/tests/testthat/test_get.R → tools/testthat/test_get.R
diff --git a/tests/testthat/test_heatmapbp.R → tools/testthat/test_heatmapbp.R b/tests/testthat/test_heatmapbp.R → tools/testthat/test_heatmapbp.R
diff --git a/tests/testthat/test_io.R → tools/testthat/test_io.R b/tests/testthat/test_io.R → tools/testthat/test_io.R
diff --git a/tests/testthat/test_is_het.R → tools/testthat/test_is_het.R b/tests/testthat/test_is_het.R → tools/testthat/test_is_het.R
diff --git a/tests/testthat/test_maf.R → tools/testthat/test_maf.R b/tests/testthat/test_maf.R → tools/testthat/test_maf.R
diff --git a/tests/testthat/test_proc_chromR.R → tools/testthat/test_proc_chromR.R b/tests/testthat/test_proc_chromR.R → tools/testthat/test_proc_chromR.R
diff --git a/tests/testthat/test_queryMETA.R → tools/testthat/test_queryMETA.R b/tests/testthat/test_queryMETA.R → tools/testthat/test_queryMETA.R
diff --git a/tests/testthat/test_query_gt.R → tools/testthat/test_query_gt.R b/tests/testthat/test_query_gt.R → tools/testthat/test_query_gt.R
diff --git a/tests/testthat/test_rank_variants.R → tools/testthat/test_rank_variants.R b/tests/testthat/test_rank_variants.R → tools/testthat/test_rank_variants.R
diff --git a/tests/testthat/test_summary_tables.R → tools/testthat/test_summary_tables.R b/tests/testthat/test_summary_tables.R → tools/testthat/test_summary_tables.R
diff --git a/tests/testthat/test_var_window.R → tools/testthat/test_var_window.R b/tests/testthat/test_var_window.R → tools/testthat/test_var_window.R
diff --git a/tests/testthat/test_vcfR2migrate.R → tools/testthat/test_vcfR2migrate.R b/tests/testthat/test_vcfR2migrate.R → tools/testthat/test_vcfR2migrate.R
diff --git a/tests/testthat/test_vcfR_methods.R → tools/testthat/test_vcfR_methods.R b/tests/testthat/test_vcfR_methods.R → tools/testthat/test_vcfR_methods.R
diff --git a/tests/testthat/test_vcfRtidy.R → tools/testthat/test_vcfRtidy.R b/tests/testthat/test_vcfRtidy.R → tools/testthat/test_vcfRtidy.R