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@knausb knausb released this 08 Dec 16:19
· 254 commits to master since this release
v1.6.0
81cb3e7

vcfR 1.6.0

Released on CRAN 2017-12-08.

  • vcfR2DNAbin() can include indels and maintains alignment.
  • write.vcf() now handles tilde expansion.
  • rePOS() attempts to create a non-overlapping coordinate system from POS and CHROM.
  • vcfR2DNAbin() manages the asterisk allele.
  • extract.indels() ignores GATK's <NON_REF>.
  • Added support for chromR objects with no gt slot to proc.chromR().
  • Created peak_to_ploid() to call peaks and calculate dfe from freq_peak() output.
  • Created freq_peak_plot() to help visualize the output of freq_peak().
  • .vcf_stats_gz now has nrows and skip parameters.
  • removed .Call() statements to standardize style.
  • Created vcfR2migrate() to output MigrateN format data.
  • Addressed clang-UBSAN memory leak in freq_peak().
  • Created pairwise_genetic_diff() to calculate pairwise differentiation.
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