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circRNA analysis pipeline doesn't work #19

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m-kouhsar opened this issue Aug 18, 2021 · 6 comments
Closed

circRNA analysis pipeline doesn't work #19

m-kouhsar opened this issue Aug 18, 2021 · 6 comments
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bug Something isn't working waiting Waiting any response from the issuer

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@m-kouhsar
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Hi

I tried to use you software to extract circRNA expression from paired end RNA-Seq data (my OS is linux). I followed the steps in Circular RNA analysis but in final step when I press the "START ANALYSIS" button nothing happens! and the pipeline don't start and don't add to jobs!

@alaimos
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alaimos commented Aug 18, 2021

Can you send us more details of the analysis you are running? For example, screenshots of all the steps for the circ-RNA analysis filled with the parameters would be helpful to identify what is happening.

@alaimos alaimos added bug Something isn't working help wanted Extra attention is needed and removed bug Something isn't working labels Aug 18, 2021
@m-kouhsar
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m-kouhsar commented Aug 18, 2021

The screenshot of all process is attached. I tried to run CIRIquant algorithm on a pared end sample. The sample was downloaded from CIRIquant home page

RNADetectror1
RNADetectror2
RNADetectror3
RNADetectror4
RNADetectror5
).

@alaimos
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alaimos commented Aug 21, 2021

Thank you for the screenshots. Did you download only the hg19 genome?
In any case, I will look into the problem and let you know as soon as I have more details.

@alaimos alaimos added the bug Something isn't working label Aug 21, 2021
@alaimos alaimos self-assigned this Aug 21, 2021
@m-kouhsar
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Yeah, I downloaded only the h19 genome.

alaimos added a commit that referenced this issue Aug 24, 2021
@alaimos
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alaimos commented Aug 24, 2021

I just released a new update that should fix your problem.
Let me know if everything now works when you can download and install the patched version (version number is still 0.0.4).

Thanks.

@alaimos alaimos added waiting Waiting any response from the issuer and removed help wanted Extra attention is needed labels Aug 24, 2021
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alaimos commented Nov 2, 2021

Closed since no other comments have been received.

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