Code to accompany manuscript on Fishing Community Vulnerability by Koehn et al. 2022 in journal Plos ONE
Much of the relevant data are within the manuscript and its Supporting Information files, including values calculated in this paper such as ecological sensitivity, exposure, risk, and community exposure, sensitivity, adaptive capacity, and vulnerability. Additionally, summarized data needed to calculate community exposure, sensitivity, adaptive capacity, and vulnerability will be provided along with R code at the time of publication at https://github.com/koehnl/CommunityVuln_PlosOne
Certain data underlying the above values presented in the study are publicly available. Specifically, through Aquamaps: https://www.aquamaps.org/ for species ranges to determine ecological risk or by contacting Aquamaps at info.aquamaps@gmail.com. Additional raster files needed to construct species range files are available here through the github page cited in this paper: O'hara CC, Afflerbach JC, Scarborough C, Kaschner K, Halpern BS. Aligning marine species range data to better serve science and conservation. PLoS One. 2017 May 3;12(5):e0175739. https://doi.org/10.1371/journal.pone.0175739 and at the associated git repository https://github.com/OHI-Science/IUCN-AquaMaps (and as part of the code to rasterize species range data available at the time of publication on github here: https://github.com/koehnl/CommunityVuln_PlosOne). Social metric data for calculating adaptive capacity for communities are available through the CDC here: https://www.atsdr.cdc.gov/placeandhealth/svi/data_documentation_download.html
The summarized tables of climate variables experienced by species in their ranges (output from the climate models), needed to calculate ecological exposure, sensitivity, and risk, will be available via Dryad (https://datadryad.org/stash) at the time of acceptance and publication (DOI here). The underlying physical and biogeochemical variables from the downscaled projections are available upon request from authors Mike Jacox at NOAA (michael.jacox@noaa.gov) or Jerome Fiechter at UC Santa Cruz (fiechter@ucsc.edu).
Confidential vessel-level landings data may be acquired by direct request from the Pacific Fisheries Information Network (PacFIN) (https://pacfin.psmfc.org/) or the Departments of Fish and Wildlife in California, Oregon, and Washington, subject to a non-disclosure agreement. R code to summarize PacFIN data as done for this paper is availabile on this github.
Values for community reliance (from NOAA California Current Integrated Ecosystem Assessment) will be provided in the same Dryad repository at the time of publication.
Note that specific sizing of figures specified in code may change during editing process for manuscript publication