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Signals with tag alloc - Make it onto the master #1

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@kostasl kostasl commented Aug 10, 2014

At this time, the master has been modified so as to run with newer boost and gcc but it does not include the latest modifications introduced to SignalsWithTagAlloc.

-template synapse allocator function . The generic template is not alled
but the objects are required to match the generic template
…e. Adedd counter of consecutive Recalls before Capacity Limit
kostasl and others added 30 commits March 14, 2013 13:18
Saturating cAMP model.

common.h Added flag USE_SATURATING_MODEL

main.cpp changed help on command line

synapseAllocator on cAMP - Replicated the generic allocArray template
…mory into SignalsWithTagAlloc

Conflicts:
	simAllocation-PKA/ContinuousTime/ContinuousTimeExperiments.h
	simAllocation-PKA/Release/runAllocSignal.sh
	simAllocation-PKA/main.cpp
	simMemLifetime-SNRFPT/Debug/simMemLifetime-SNRFPT
… in conttimeExperiments.h

Merge branch 'SignalsWithTagAlloc' of https://github.com/kostasl/synapticMemory into TagAllocation

Conflicts:
	simAllocation-PKA/ContinuousTime/ContinuousTimeExperiments.h
	simAllocation-PKA/Release/runAllocSignal.sh
	simAllocation-PKA/main.cpp
…emory into SignalsWithTagAlloc

Conflicts:
	simAllocation-PKA/ContinuousTime/ContinuousTimeExperiments.h
	simAllocation-PKA/Release/runAllocSignal.sh
	simAllocation-PKA/main.cpp
… So I can Count threshold Cycles After 1st memory Encoding .

I obtained the ThresholdCycle Distribution
changed flags in main and common.h
Removed assertion that simulation time should be more than last rep time
for this type of simulation
…pticMemory into SignalsWithTagAlloc

Conflicts:
	simAllocation-PKA/ContinuousTime/ContinuousTimeExperiments.h
	simAllocation-PKA/main.cpp
…ctory.

Added CascadeDualFilter model support. changed parameter trial to sampleSize to clarify
the role this parameter plays.
…pticMemory into SignalsWithTagAlloc

Conflicts:
	.metadata/.log
	.metadata/.plugins/org.eclipse.cdt.core/.log
	.metadata/.plugins/org.eclipse.core.resources/.safetable/org.eclipse.core.resources
	.metadata/.plugins/org.eclipse.ui.workbench/dialog_settings.xml
	.metadata/.plugins/org.eclipse.ui.workbench/workbench.xml
	simMemLifetime-SNRFPT/main.cpp
…d poissonSource on SNRFPT to match the other sims on passing the GSLRNG instance. Fixed openfile references where the code had not been updated to handle directory and filename correctly I reverted to direct ofStream instance.
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