Version 1.2.0

Version 1.2.0 2023-03-17

• Remove the skip validation option.
• Use miComplete instead of checkM for the recursive step.
• Make multiple recursive step if necessary.
• Sort pairs and do the scaffolding in the pipeline module.
• Add QC, pairs and scaffold modules.
• Correct pairs indexed loading.
• Add option to remove reads mapping at the edges of the contigs.
• Add possibility to used compressed pairs as input.
• Parallelization of the recursive step.
• Change bin id to make them sortable.
• Correct reads extraction bugs for contact map module.
• Correct bugs from cutsite mapping mode.
• Remove Looseversion sorting Warning.
• Update requirements file.
• Change output plot colors.
• Add tests for QC module.
• Update tests of network, partition and validation modules.
• Update documentation.