MoDentify

Phenotype-driven module identification based on multilevel metabolomics networks

R package

Version history

• 3/11/19 - Updated package to work with RCy3 package for Cytoscape connectivity
• 1/18/18 - Initial commit

Citation:

Do KD, Rasp D, Kastenmueller G, Suhre K, Krumsiek J.
MoDentify: phenotype-driven module identification in metabolomics networks at different resolutions.
Bioinformatics, 2018
https://doi.org/10.1093/bioinformatics/bty650

Installation:

# Installation of the development version from GitHub
if (!requireNamespace("devtools", quietly = TRUE))
    install.packages("devtools")
devtools::install_github("krumsieklab/MoDentify", build_vignettes = T)

(takes about a minute, since it compiles the Vignette)

Show vignette with example code:

browseVignettes("MoDentify")