This is the Python script accompanying Monika Mioduchowska, Edyta Konecka, Bartłomiej Gołdyn, Tom Pinceel, Luc Brendonck, Dunja Lukić, Łukasz Kaczmarek, Tadeusz Namiotko, Katarzyna Zając, Tadeusz Zając, Jan P. Jastrzębski, Krzysztof Bartoszek, Wolbachia enigma: Playing peekaboo with a master manipulator .
For a collection of sequence and a target sequence, it locally aligns each sequence to the target and then orders the sequences according to their match.